Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08395

Experiment: soil EcoFAB sample 2; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	soil EcoFAB sample 2; outgrowth in LB
1,784,059	+		ABZR87_RS08390	0.16	-1.7
1,784,059	+		ABZR87_RS08390	0.16	-1.8
1,784,060	-		ABZR87_RS08390	0.16	+0.0
1,784,060	-		ABZR87_RS08390	0.16	-0.8
1,784,115	+		ABZR87_RS08390	0.22	-0.8
1,784,115	+		ABZR87_RS08390	0.22	+0.4
1,784,115	+		ABZR87_RS08390	0.22	+0.3
1,784,116	-		ABZR87_RS08390	0.22	-1.2
1,784,226	+		ABZR87_RS08390	0.33	-0.1
1,784,226	+		ABZR87_RS08390	0.33	-2.5
1,784,226	+		ABZR87_RS08390	0.33	+0.0
1,784,226	+		ABZR87_RS08390	0.33	-1.6
1,784,226	+		ABZR87_RS08390	0.33	-1.4
1,784,227	-		ABZR87_RS08390	0.33	-0.2
1,784,227	-		ABZR87_RS08390	0.33	+1.4
1,784,227	-		ABZR87_RS08390	0.33	+0.9
1,784,227	-		ABZR87_RS08390	0.33	-1.2
1,784,227	-		ABZR87_RS08390	0.33	+0.6
1,784,245	+		ABZR87_RS08390	0.35	-1.0
1,784,246	-		ABZR87_RS08390	0.35	-2.0
1,784,315	+		ABZR87_RS08390	0.43	-0.3
1,784,316	-		ABZR87_RS08390	0.43	+2.5
1,784,433	+		ABZR87_RS08390	0.55	+0.4
1,784,434	-		ABZR87_RS08390	0.55	-2.7
1,784,583	+		ABZR87_RS08390	0.70	+0.3
1,784,583	+		ABZR87_RS08390	0.70	+0.1
1,784,583	+		ABZR87_RS08390	0.70	-2.2
1,784,584	-		ABZR87_RS08390	0.71	-0.7
1,784,584	-		ABZR87_RS08390	0.71	-0.9
1,784,584	-		ABZR87_RS08390	0.71	-0.1
1,784,602	+		ABZR87_RS08390	0.72	+0.7
1,784,602	+		ABZR87_RS08390	0.72	+0.1
1,784,603	-		ABZR87_RS08390	0.72	-0.1
1,784,652	+		ABZR87_RS08390	0.78	+0.8
1,784,653	-		ABZR87_RS08390	0.78	-0.1
1,784,695	+		ABZR87_RS08390	0.82	+0.2
1,784,695	+		ABZR87_RS08390	0.82	-1.6
1,784,696	-		ABZR87_RS08390	0.82	+1.3
1,784,696	-		ABZR87_RS08390	0.82	+0.3
1,784,696	-		ABZR87_RS08390	0.82	+0.6
1,784,696	-		ABZR87_RS08390	0.82	-0.4
1,784,712	+		ABZR87_RS08390	0.84	+0.4
1,784,713	-		ABZR87_RS08390	0.84	+0.7
1,784,713	-		ABZR87_RS08390	0.84	-1.0
1,784,713	-		ABZR87_RS08390	0.84	-1.9
1,784,745	+		ABZR87_RS08390	0.87	+0.9
1,784,865	+				-0.8
1,784,866	-				+0.0
1,784,866	-				+0.4
1,784,922	+				+0.9
1,784,922	+				+1.2
1,784,922	+				-0.5
1,784,923	-				-0.1
1,784,923	-				-2.0
1,784,923	-				+0.7
1,784,923	-				+0.8
1,784,924	+				+0.5
1,784,925	-				+1.2
1,784,930	-				+1.1
1,784,932	+				+1.6
1,784,932	+				-1.9
1,784,932	+				-1.5
1,784,973	+				-0.2
1,784,974	-				+0.4
1,784,974	-				-0.7
1,784,974	-				+0.5
1,784,974	-				+0.0
1,785,162	+		ABZR87_RS08395	0.10	-0.7
1,785,162	+		ABZR87_RS08395	0.10	-1.3
1,785,163	-		ABZR87_RS08395	0.11	+0.0
1,785,163	-		ABZR87_RS08395	0.11	+0.5
1,785,200	-		ABZR87_RS08395	0.13	-0.2
1,785,200	-		ABZR87_RS08395	0.13	+0.1
1,785,200	-		ABZR87_RS08395	0.13	+0.2
1,785,215	+		ABZR87_RS08395	0.15	+1.2
1,785,215	+		ABZR87_RS08395	0.15	+1.0
1,785,216	-		ABZR87_RS08395	0.15	+1.5
1,785,326	+		ABZR87_RS08395	0.23	+1.3
1,785,356	+		ABZR87_RS08395	0.26	-0.0
1,785,356	+		ABZR87_RS08395	0.26	+0.4
1,785,356	+		ABZR87_RS08395	0.26	-0.1
1,785,357	-		ABZR87_RS08395	0.26	-0.9
1,785,365	+		ABZR87_RS08395	0.26	-0.8
1,785,365	+		ABZR87_RS08395	0.26	-0.2
1,785,366	-		ABZR87_RS08395	0.26	+0.3
1,785,472	+		ABZR87_RS08395	0.34	+1.9
1,785,473	-		ABZR87_RS08395	0.35	-2.2
1,785,473	-		ABZR87_RS08395	0.35	-0.5
1,785,483	+		ABZR87_RS08395	0.35	+0.4
1,785,534	+		ABZR87_RS08395	0.39	-3.0
1,785,534	+		ABZR87_RS08395	0.39	+0.2
1,785,535	-		ABZR87_RS08395	0.39	-0.7
1,785,666	+		ABZR87_RS08395	0.50	-0.1
1,785,666	+		ABZR87_RS08395	0.50	-2.2
1,785,666	+		ABZR87_RS08395	0.50	-2.0
1,785,667	-		ABZR87_RS08395	0.50	-1.0
1,785,667	-		ABZR87_RS08395	0.50	+0.3
1,785,795	+		ABZR87_RS08395	0.60	+0.5
1,785,813	+		ABZR87_RS08395	0.61	+0.8
1,785,814	-		ABZR87_RS08395	0.61	+1.1
1,785,814	-		ABZR87_RS08395	0.61	-1.0
1,785,996	+		ABZR87_RS08395	0.75	+0.7
1,785,996	+		ABZR87_RS08395	0.75	+0.3
1,785,996	+		ABZR87_RS08395	0.75	+0.0
1,785,996	+		ABZR87_RS08395	0.75	+0.6
1,785,997	-		ABZR87_RS08395	0.75	+1.0
1,786,065	+		ABZR87_RS08395	0.80	-0.7
1,786,065	+		ABZR87_RS08395	0.80	+0.4
1,786,065	+		ABZR87_RS08395	0.80	+0.3
1,786,065	+		ABZR87_RS08395	0.80	-2.5
1,786,065	+		ABZR87_RS08395	0.80	-3.5
1,786,066	-		ABZR87_RS08395	0.81	+0.3
1,786,066	-		ABZR87_RS08395	0.81	-0.2
1,786,066	-		ABZR87_RS08395	0.81	-1.2
1,786,066	-		ABZR87_RS08395	0.81	+0.2
1,786,087	+		ABZR87_RS08395	0.82	+1.7
1,786,087	+		ABZR87_RS08395	0.82	+0.4
1,786,088	-		ABZR87_RS08395	0.82	-0.4
1,786,088	-		ABZR87_RS08395	0.82	-3.0
1,786,230	+				+0.1
1,786,231	-				-1.0
1,786,231	-				-1.4
1,786,231	-				+0.2
1,786,232	+				-0.9
1,786,309	+				+0.4
1,786,309	+				-0.0
1,786,310	-				-0.1
1,786,314	+				-0.3
1,786,314	+				+3.4
1,786,314	+				+0.8
1,786,315	-				-2.3
1,786,315	-				-0.2
1,786,315	-				-1.1
1,786,315	-				-1.6
1,786,380	+				+0.8
1,786,381	-				-0.2
1,786,448	+				-1.1
1,786,449	-				-0.6
1,786,449	-				+0.5
1,786,545	+				-1.2
1,786,570	+				-1.0
1,786,571	-				-0.6
1,786,627	+				+1.1
1,786,627	+				-0.8
1,786,627	+				+1.2
1,786,627	+				-1.4
1,786,627	+				-0.3
1,786,627	+				-3.2
1,786,627	+				-2.1
1,786,628	-				-3.7
1,786,628	-				-0.6
1,786,628	-				-1.5
1,786,628	-				-0.2
1,786,628	-				+0.4
1,786,628	-				-1.4
1,786,631	+				+1.3
1,786,631	+				+0.8
1,786,632	-				+0.5
1,786,640	+				+0.2
1,786,654	+				-3.1
1,786,655	-				-2.4
1,786,681	-				-2.8
1,786,697	+				+0.3
1,786,698	-				-0.7
1,786,732	+				+0.3
1,786,733	-				+1.2
1,786,899	+				-2.0
1,787,011	+				-1.6
1,787,084	+		ABZR87_RS08400	0.10	+0.3
1,787,152	+		ABZR87_RS08400	0.58	-2.2
1,787,246	+				-0.2
1,787,246	+				+0.9
1,787,246	+				-0.4
1,787,246	+				-0.2
1,787,247	-				+0.1
1,787,301	-				-0.9
1,787,301	-				+0.3