Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07960

Experiment: soil EcoFAB sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS07955 and ABZR87_RS07960 overlap by 8 nucleotidesABZR87_RS07960 and ABZR87_RS07965 are separated by 265 nucleotides ABZR87_RS07955: ABZR87_RS07955 - sensor histidine kinase, at 1,690,968 to 1,692,548 _RS07955 ABZR87_RS07960: ABZR87_RS07960 - response regulator transcription factor, at 1,692,541 to 1,693,254 _RS07960 ABZR87_RS07965: ABZR87_RS07965 - recombinase RecA, at 1,693,520 to 1,694,578 _RS07965 Position (kb) 1692 1693 1694Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1691.678 kb on + strand, within ABZR87_RS07955at 1691.679 kb on - strand, within ABZR87_RS07955at 1691.714 kb on + strand, within ABZR87_RS07955at 1691.715 kb on - strand, within ABZR87_RS07955at 1691.827 kb on - strand, within ABZR87_RS07955at 1691.999 kb on + strand, within ABZR87_RS07955at 1691.999 kb on + strand, within ABZR87_RS07955at 1692.000 kb on - strand, within ABZR87_RS07955at 1692.000 kb on - strand, within ABZR87_RS07955at 1692.000 kb on - strand, within ABZR87_RS07955at 1692.000 kb on - strand, within ABZR87_RS07955at 1692.001 kb on + strand, within ABZR87_RS07955at 1692.001 kb on + strand, within ABZR87_RS07955at 1692.001 kb on + strand, within ABZR87_RS07955at 1692.001 kb on + strand, within ABZR87_RS07955at 1692.001 kb on + strand, within ABZR87_RS07955at 1692.001 kb on + strand, within ABZR87_RS07955at 1692.001 kb on + strand, within ABZR87_RS07955at 1692.001 kb on + strand, within ABZR87_RS07955at 1692.001 kb on + strand, within ABZR87_RS07955at 1692.001 kb on + strand, within ABZR87_RS07955at 1692.001 kb on + strand, within ABZR87_RS07955at 1692.002 kb on - strand, within ABZR87_RS07955at 1692.002 kb on - strand, within ABZR87_RS07955at 1692.002 kb on - strand, within ABZR87_RS07955at 1692.002 kb on - strand, within ABZR87_RS07955at 1692.002 kb on - strand, within ABZR87_RS07955at 1692.002 kb on - strand, within ABZR87_RS07955at 1692.139 kb on + strand, within ABZR87_RS07955at 1692.139 kb on + strand, within ABZR87_RS07955at 1692.140 kb on - strand, within ABZR87_RS07955at 1692.142 kb on + strand, within ABZR87_RS07955at 1692.142 kb on + strand, within ABZR87_RS07955at 1692.142 kb on + strand, within ABZR87_RS07955at 1692.142 kb on + strand, within ABZR87_RS07955at 1692.142 kb on + strand, within ABZR87_RS07955at 1692.142 kb on + strand, within ABZR87_RS07955at 1692.142 kb on + strand, within ABZR87_RS07955at 1692.142 kb on + strand, within ABZR87_RS07955at 1692.142 kb on + strand, within ABZR87_RS07955at 1692.142 kb on + strand, within ABZR87_RS07955at 1692.143 kb on - strand, within ABZR87_RS07955at 1692.143 kb on - strand, within ABZR87_RS07955at 1692.143 kb on - strand, within ABZR87_RS07955at 1692.143 kb on - strand, within ABZR87_RS07955at 1692.146 kb on + strand, within ABZR87_RS07955at 1692.146 kb on + strand, within ABZR87_RS07955at 1692.146 kb on + strand, within ABZR87_RS07955at 1692.146 kb on + strand, within ABZR87_RS07955at 1692.146 kb on + strand, within ABZR87_RS07955at 1692.147 kb on - strand, within ABZR87_RS07955at 1692.147 kb on - strand, within ABZR87_RS07955at 1692.147 kb on - strand, within ABZR87_RS07955at 1692.147 kb on - strand, within ABZR87_RS07955at 1692.147 kb on - strand, within ABZR87_RS07955at 1692.271 kb on + strand, within ABZR87_RS07955at 1692.272 kb on - strand, within ABZR87_RS07955at 1692.304 kb on + strand, within ABZR87_RS07955at 1692.304 kb on + strand, within ABZR87_RS07955at 1692.304 kb on + strand, within ABZR87_RS07955at 1692.304 kb on + strand, within ABZR87_RS07955at 1692.305 kb on - strand, within ABZR87_RS07955at 1692.305 kb on - strand, within ABZR87_RS07955at 1692.305 kb on - strand, within ABZR87_RS07955at 1692.305 kb on - strand, within ABZR87_RS07955at 1692.305 kb on - strand, within ABZR87_RS07955at 1692.599 kb on + strandat 1692.599 kb on + strandat 1692.599 kb on + strandat 1692.600 kb on - strandat 1692.668 kb on + strand, within ABZR87_RS07960at 1692.668 kb on + strand, within ABZR87_RS07960at 1692.668 kb on + strand, within ABZR87_RS07960at 1692.669 kb on - strand, within ABZR87_RS07960at 1692.669 kb on - strand, within ABZR87_RS07960at 1692.669 kb on - strand, within ABZR87_RS07960at 1692.669 kb on - strand, within ABZR87_RS07960at 1692.669 kb on - strand, within ABZR87_RS07960at 1692.669 kb on - strand, within ABZR87_RS07960at 1692.669 kb on - strand, within ABZR87_RS07960at 1692.669 kb on - strand, within ABZR87_RS07960at 1692.669 kb on - strand, within ABZR87_RS07960at 1692.669 kb on - strand, within ABZR87_RS07960at 1692.820 kb on - strand, within ABZR87_RS07960at 1692.821 kb on + strand, within ABZR87_RS07960at 1692.821 kb on + strand, within ABZR87_RS07960at 1692.821 kb on + strand, within ABZR87_RS07960at 1692.821 kb on + strand, within ABZR87_RS07960at 1692.821 kb on + strand, within ABZR87_RS07960at 1692.821 kb on + strand, within ABZR87_RS07960at 1692.821 kb on + strand, within ABZR87_RS07960at 1692.821 kb on + strand, within ABZR87_RS07960at 1692.821 kb on + strand, within ABZR87_RS07960at 1692.821 kb on + strand, within ABZR87_RS07960at 1692.821 kb on + strand, within ABZR87_RS07960at 1692.821 kb on + strand, within ABZR87_RS07960at 1692.821 kb on + strand, within ABZR87_RS07960at 1692.821 kb on + strand, within ABZR87_RS07960at 1692.821 kb on + strand, within ABZR87_RS07960at 1692.821 kb on + strand, within ABZR87_RS07960at 1692.822 kb on - strand, within ABZR87_RS07960at 1692.822 kb on - strand, within ABZR87_RS07960at 1692.822 kb on - strand, within ABZR87_RS07960at 1692.822 kb on - strand, within ABZR87_RS07960at 1692.822 kb on - strand, within ABZR87_RS07960at 1692.822 kb on - strand, within ABZR87_RS07960at 1692.822 kb on - strand, within ABZR87_RS07960at 1692.953 kb on + strand, within ABZR87_RS07960at 1692.953 kb on + strand, within ABZR87_RS07960at 1692.953 kb on + strand, within ABZR87_RS07960at 1692.953 kb on + strand, within ABZR87_RS07960at 1692.953 kb on + strand, within ABZR87_RS07960at 1692.953 kb on + strand, within ABZR87_RS07960at 1692.953 kb on + strand, within ABZR87_RS07960at 1692.954 kb on - strand, within ABZR87_RS07960at 1692.954 kb on - strand, within ABZR87_RS07960at 1692.954 kb on - strand, within ABZR87_RS07960at 1692.954 kb on - strand, within ABZR87_RS07960at 1692.954 kb on - strand, within ABZR87_RS07960at 1692.954 kb on - strand, within ABZR87_RS07960at 1692.954 kb on - strand, within ABZR87_RS07960at 1693.077 kb on + strand, within ABZR87_RS07960at 1693.078 kb on - strand, within ABZR87_RS07960at 1693.078 kb on - strand, within ABZR87_RS07960at 1693.112 kb on + strand, within ABZR87_RS07960at 1693.112 kb on + strand, within ABZR87_RS07960at 1693.112 kb on + strand, within ABZR87_RS07960at 1693.112 kb on + strand, within ABZR87_RS07960at 1693.112 kb on + strand, within ABZR87_RS07960at 1693.112 kb on + strand, within ABZR87_RS07960at 1693.112 kb on + strand, within ABZR87_RS07960at 1693.112 kb on + strand, within ABZR87_RS07960at 1693.112 kb on + strand, within ABZR87_RS07960at 1693.112 kb on + strand, within ABZR87_RS07960at 1693.112 kb on + strand, within ABZR87_RS07960at 1693.112 kb on + strand, within ABZR87_RS07960at 1693.112 kb on + strand, within ABZR87_RS07960at 1693.113 kb on - strand, within ABZR87_RS07960at 1693.113 kb on - strand, within ABZR87_RS07960at 1693.113 kb on - strand, within ABZR87_RS07960at 1693.181 kb on + strand, within ABZR87_RS07960at 1693.181 kb on + strand, within ABZR87_RS07960at 1693.181 kb on + strand, within ABZR87_RS07960at 1693.181 kb on + strand, within ABZR87_RS07960at 1693.182 kb on - strand, within ABZR87_RS07960at 1693.182 kb on - strand, within ABZR87_RS07960at 1693.304 kb on + strandat 1693.304 kb on + strandat 1693.305 kb on - strandat 1693.366 kb on + strandat 1693.387 kb on + strandat 1693.387 kb on + strandat 1693.387 kb on + strandat 1693.387 kb on + strandat 1693.388 kb on - strandat 1693.388 kb on - strandat 1693.388 kb on - strandat 1693.492 kb on + strandat 1693.492 kb on + strandat 1693.492 kb on + strandat 1693.492 kb on + strandat 1693.493 kb on - strandat 1693.493 kb on - strandat 1693.493 kb on - strandat 1693.493 kb on - strandat 1693.493 kb on - strandat 1693.494 kb on + strandat 1693.494 kb on + strandat 1693.494 kb on + strandat 1693.494 kb on + strandat 1693.495 kb on - strandat 1693.495 kb on - strandat 1693.495 kb on - strandat 1693.531 kb on + strandat 1693.531 kb on + strandat 1693.531 kb on + strandat 1693.736 kb on + strand, within ABZR87_RS07965at 1693.737 kb on - strand, within ABZR87_RS07965at 1693.756 kb on + strand, within ABZR87_RS07965at 1693.757 kb on - strand, within ABZR87_RS07965at 1693.757 kb on - strand, within ABZR87_RS07965at 1694.150 kb on + strand, within ABZR87_RS07965at 1694.196 kb on - strand, within ABZR87_RS07965at 1694.196 kb on - strand, within ABZR87_RS07965

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Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 2; outgrowth in LB
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1,691,678 + ABZR87_RS07955 0.45 +0.7
1,691,679 - ABZR87_RS07955 0.45 -0.7
1,691,714 + ABZR87_RS07955 0.47 +2.4
1,691,715 - ABZR87_RS07955 0.47 -0.1
1,691,827 - ABZR87_RS07955 0.54 +0.6
1,691,999 + ABZR87_RS07955 0.65 +1.2
1,691,999 + ABZR87_RS07955 0.65 +0.9
1,692,000 - ABZR87_RS07955 0.65 -2.3
1,692,000 - ABZR87_RS07955 0.65 -0.0
1,692,000 - ABZR87_RS07955 0.65 -1.6
1,692,000 - ABZR87_RS07955 0.65 +0.4
1,692,001 + ABZR87_RS07955 0.65 -0.9
1,692,001 + ABZR87_RS07955 0.65 -0.3
1,692,001 + ABZR87_RS07955 0.65 +1.6
1,692,001 + ABZR87_RS07955 0.65 +0.8
1,692,001 + ABZR87_RS07955 0.65 -3.4
1,692,001 + ABZR87_RS07955 0.65 -0.3
1,692,001 + ABZR87_RS07955 0.65 +0.9
1,692,001 + ABZR87_RS07955 0.65 -1.3
1,692,001 + ABZR87_RS07955 0.65 -1.4
1,692,001 + ABZR87_RS07955 0.65 +0.1
1,692,001 + ABZR87_RS07955 0.65 +0.3
1,692,002 - ABZR87_RS07955 0.65 -1.3
1,692,002 - ABZR87_RS07955 0.65 +0.9
1,692,002 - ABZR87_RS07955 0.65 -0.9
1,692,002 - ABZR87_RS07955 0.65 -0.1
1,692,002 - ABZR87_RS07955 0.65 +0.6
1,692,002 - ABZR87_RS07955 0.65 +0.3
1,692,139 + ABZR87_RS07955 0.74 -1.3
1,692,139 + ABZR87_RS07955 0.74 -0.6
1,692,140 - ABZR87_RS07955 0.74 -0.1
1,692,142 + ABZR87_RS07955 0.74 +0.7
1,692,142 + ABZR87_RS07955 0.74 -2.9
1,692,142 + ABZR87_RS07955 0.74 +0.4
1,692,142 + ABZR87_RS07955 0.74 +0.6
1,692,142 + ABZR87_RS07955 0.74 -0.1
1,692,142 + ABZR87_RS07955 0.74 -1.4
1,692,142 + ABZR87_RS07955 0.74 -0.2
1,692,142 + ABZR87_RS07955 0.74 +0.1
1,692,142 + ABZR87_RS07955 0.74 +1.2
1,692,142 + ABZR87_RS07955 0.74 +0.2
1,692,143 - ABZR87_RS07955 0.74 +3.5
1,692,143 - ABZR87_RS07955 0.74 +1.0
1,692,143 - ABZR87_RS07955 0.74 +0.1
1,692,143 - ABZR87_RS07955 0.74 +0.2
1,692,146 + ABZR87_RS07955 0.75 -1.6
1,692,146 + ABZR87_RS07955 0.75 -1.9
1,692,146 + ABZR87_RS07955 0.75 -0.4
1,692,146 + ABZR87_RS07955 0.75 -0.2
1,692,146 + ABZR87_RS07955 0.75 +0.7
1,692,147 - ABZR87_RS07955 0.75 -0.5
1,692,147 - ABZR87_RS07955 0.75 -3.6
1,692,147 - ABZR87_RS07955 0.75 -1.7
1,692,147 - ABZR87_RS07955 0.75 +1.4
1,692,147 - ABZR87_RS07955 0.75 +0.5
1,692,271 + ABZR87_RS07955 0.82 +0.3
1,692,272 - ABZR87_RS07955 0.82 -2.1
1,692,304 + ABZR87_RS07955 0.85 -0.2
1,692,304 + ABZR87_RS07955 0.85 +0.6
1,692,304 + ABZR87_RS07955 0.85 -1.0
1,692,304 + ABZR87_RS07955 0.85 +0.0
1,692,305 - ABZR87_RS07955 0.85 -1.3
1,692,305 - ABZR87_RS07955 0.85 +1.0
1,692,305 - ABZR87_RS07955 0.85 +1.7
1,692,305 - ABZR87_RS07955 0.85 +0.5
1,692,305 - ABZR87_RS07955 0.85 -3.1
1,692,599 + -0.0
1,692,599 + +0.9
1,692,599 + +0.2
1,692,600 - -0.1
1,692,668 + ABZR87_RS07960 0.18 -1.6
1,692,668 + ABZR87_RS07960 0.18 -0.2
1,692,668 + ABZR87_RS07960 0.18 -0.2
1,692,669 - ABZR87_RS07960 0.18 -1.6
1,692,669 - ABZR87_RS07960 0.18 -0.4
1,692,669 - ABZR87_RS07960 0.18 +0.6
1,692,669 - ABZR87_RS07960 0.18 -2.5
1,692,669 - ABZR87_RS07960 0.18 +0.0
1,692,669 - ABZR87_RS07960 0.18 +1.0
1,692,669 - ABZR87_RS07960 0.18 +1.7
1,692,669 - ABZR87_RS07960 0.18 -0.1
1,692,669 - ABZR87_RS07960 0.18 +0.7
1,692,669 - ABZR87_RS07960 0.18 -0.6
1,692,820 - ABZR87_RS07960 0.39 -0.4
1,692,821 + ABZR87_RS07960 0.39 +0.3
1,692,821 + ABZR87_RS07960 0.39 +1.6
1,692,821 + ABZR87_RS07960 0.39 -2.7
1,692,821 + ABZR87_RS07960 0.39 +0.3
1,692,821 + ABZR87_RS07960 0.39 +0.4
1,692,821 + ABZR87_RS07960 0.39 +1.1
1,692,821 + ABZR87_RS07960 0.39 +0.0
1,692,821 + ABZR87_RS07960 0.39 +0.9
1,692,821 + ABZR87_RS07960 0.39 -0.6
1,692,821 + ABZR87_RS07960 0.39 -0.3
1,692,821 + ABZR87_RS07960 0.39 -0.6
1,692,821 + ABZR87_RS07960 0.39 -0.1
1,692,821 + ABZR87_RS07960 0.39 -1.3
1,692,821 + ABZR87_RS07960 0.39 +0.8
1,692,821 + ABZR87_RS07960 0.39 +1.7
1,692,821 + ABZR87_RS07960 0.39 -0.4
1,692,822 - ABZR87_RS07960 0.39 -0.1
1,692,822 - ABZR87_RS07960 0.39 +0.4
1,692,822 - ABZR87_RS07960 0.39 +2.3
1,692,822 - ABZR87_RS07960 0.39 +0.3
1,692,822 - ABZR87_RS07960 0.39 -0.7
1,692,822 - ABZR87_RS07960 0.39 +0.1
1,692,822 - ABZR87_RS07960 0.39 +0.5
1,692,953 + ABZR87_RS07960 0.58 +0.0
1,692,953 + ABZR87_RS07960 0.58 -0.0
1,692,953 + ABZR87_RS07960 0.58 +0.6
1,692,953 + ABZR87_RS07960 0.58 +0.4
1,692,953 + ABZR87_RS07960 0.58 +1.2
1,692,953 + ABZR87_RS07960 0.58 +0.9
1,692,953 + ABZR87_RS07960 0.58 +0.7
1,692,954 - ABZR87_RS07960 0.58 -0.6
1,692,954 - ABZR87_RS07960 0.58 +0.6
1,692,954 - ABZR87_RS07960 0.58 -0.1
1,692,954 - ABZR87_RS07960 0.58 -0.4
1,692,954 - ABZR87_RS07960 0.58 +0.5
1,692,954 - ABZR87_RS07960 0.58 -0.9
1,692,954 - ABZR87_RS07960 0.58 +1.6
1,693,077 + ABZR87_RS07960 0.75 +0.3
1,693,078 - ABZR87_RS07960 0.75 +0.3
1,693,078 - ABZR87_RS07960 0.75 -0.6
1,693,112 + ABZR87_RS07960 0.80 +0.1
1,693,112 + ABZR87_RS07960 0.80 -0.3
1,693,112 + ABZR87_RS07960 0.80 +1.2
1,693,112 + ABZR87_RS07960 0.80 -0.2
1,693,112 + ABZR87_RS07960 0.80 +1.4
1,693,112 + ABZR87_RS07960 0.80 +0.4
1,693,112 + ABZR87_RS07960 0.80 -0.4
1,693,112 + ABZR87_RS07960 0.80 +1.1
1,693,112 + ABZR87_RS07960 0.80 +0.8
1,693,112 + ABZR87_RS07960 0.80 +0.1
1,693,112 + ABZR87_RS07960 0.80 +0.2
1,693,112 + ABZR87_RS07960 0.80 +0.5
1,693,112 + ABZR87_RS07960 0.80 -2.2
1,693,113 - ABZR87_RS07960 0.80 -3.7
1,693,113 - ABZR87_RS07960 0.80 -0.0
1,693,113 - ABZR87_RS07960 0.80 +0.7
1,693,181 + ABZR87_RS07960 0.90 -0.8
1,693,181 + ABZR87_RS07960 0.90 +0.9
1,693,181 + ABZR87_RS07960 0.90 +0.2
1,693,181 + ABZR87_RS07960 0.90 +0.1
1,693,182 - ABZR87_RS07960 0.90 +0.3
1,693,182 - ABZR87_RS07960 0.90 +0.3
1,693,304 + +0.5
1,693,304 + +0.4
1,693,305 - -0.1
1,693,366 + +0.6
1,693,387 + +0.4
1,693,387 + -0.7
1,693,387 + +0.4
1,693,387 + -0.0
1,693,388 - -1.5
1,693,388 - +0.9
1,693,388 - -0.3
1,693,492 + -1.8
1,693,492 + +0.6
1,693,492 + -0.7
1,693,492 + +0.2
1,693,493 - -0.7
1,693,493 - +3.3
1,693,493 - -0.3
1,693,493 - +0.6
1,693,493 - -2.3
1,693,494 + -1.6
1,693,494 + -3.4
1,693,494 + -2.4
1,693,494 + +0.1
1,693,495 - +0.4
1,693,495 - -1.1
1,693,495 - -1.1
1,693,531 + -1.8
1,693,531 + +0.2
1,693,531 + -1.4
1,693,736 + ABZR87_RS07965 0.20 +0.9
1,693,737 - ABZR87_RS07965 0.20 -1.5
1,693,756 + ABZR87_RS07965 0.22 +0.0
1,693,757 - ABZR87_RS07965 0.22 -0.9
1,693,757 - ABZR87_RS07965 0.22 -2.5
1,694,150 + ABZR87_RS07965 0.59 -0.6
1,694,196 - ABZR87_RS07965 0.64 +0.9
1,694,196 - ABZR87_RS07965 0.64 +0.6

Or see this region's nucleotide sequence