Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07755

Experiment: soil EcoFAB sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS07750 and ABZR87_RS07755 are separated by 176 nucleotidesABZR87_RS07755 and ABZR87_RS07760 are separated by 64 nucleotides ABZR87_RS07750: ABZR87_RS07750 - glycine--tRNA ligase subunit alpha, at 1,642,899 to 1,643,885 _RS07750 ABZR87_RS07755: ABZR87_RS07755 - apolipoprotein N-acyltransferase, at 1,644,062 to 1,645,573 _RS07755 ABZR87_RS07760: ABZR87_RS07760 - HlyC/CorC family transporter, at 1,645,638 to 1,646,531 _RS07760 Position (kb) 1644 1645 1646Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1644.206 kb on - strandat 1644.720 kb on + strand, within ABZR87_RS07755at 1644.720 kb on + strand, within ABZR87_RS07755at 1645.957 kb on + strand, within ABZR87_RS07760at 1645.958 kb on - strand, within ABZR87_RS07760at 1646.161 kb on + strand, within ABZR87_RS07760at 1646.162 kb on - strand, within ABZR87_RS07760at 1646.162 kb on - strand, within ABZR87_RS07760at 1646.550 kb on + strandat 1646.551 kb on - strandat 1646.567 kb on + strandat 1646.567 kb on + strandat 1646.568 kb on - strandat 1646.568 kb on - strandat 1646.568 kb on - strandat 1646.568 kb on - strandat 1646.568 kb on - strandat 1646.568 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 2; outgrowth in LB
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1,644,206 - +1.2
1,644,720 + ABZR87_RS07755 0.44 +1.6
1,644,720 + ABZR87_RS07755 0.44 +1.6
1,645,957 + ABZR87_RS07760 0.36 -1.1
1,645,958 - ABZR87_RS07760 0.36 -3.5
1,646,161 + ABZR87_RS07760 0.59 -1.8
1,646,162 - ABZR87_RS07760 0.59 +1.2
1,646,162 - ABZR87_RS07760 0.59 -3.8
1,646,550 + -1.9
1,646,551 - -0.0
1,646,567 + -1.2
1,646,567 + -1.5
1,646,568 - -1.8
1,646,568 - +0.6
1,646,568 - -1.9
1,646,568 - +0.1
1,646,568 - -1.7
1,646,568 - +1.2

Or see this region's nucleotide sequence