Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07030

Experiment: soil EcoFAB sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS07025 and ABZR87_RS07030 are separated by 30 nucleotidesABZR87_RS07030 and ABZR87_RS07035 are separated by 105 nucleotides ABZR87_RS07025: ABZR87_RS07025 - A/G-specific adenine glycosylase, at 1,484,595 to 1,485,743 _RS07025 ABZR87_RS07030: ABZR87_RS07030 - LON peptidase substrate-binding domain-containing protein, at 1,485,774 to 1,486,427 _RS07030 ABZR87_RS07035: ABZR87_RS07035 - RNase adapter RapZ, at 1,486,533 to 1,487,426 _RS07035 Position (kb) 1485 1486 1487Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1484.802 kb on + strand, within ABZR87_RS07025at 1484.803 kb on - strand, within ABZR87_RS07025at 1484.805 kb on + strand, within ABZR87_RS07025at 1484.805 kb on + strand, within ABZR87_RS07025at 1484.805 kb on + strand, within ABZR87_RS07025at 1484.805 kb on + strand, within ABZR87_RS07025at 1484.805 kb on + strand, within ABZR87_RS07025at 1484.805 kb on + strand, within ABZR87_RS07025at 1484.806 kb on - strand, within ABZR87_RS07025at 1484.806 kb on - strand, within ABZR87_RS07025at 1484.895 kb on + strand, within ABZR87_RS07025at 1484.898 kb on + strand, within ABZR87_RS07025at 1484.899 kb on - strand, within ABZR87_RS07025at 1484.899 kb on - strand, within ABZR87_RS07025at 1484.899 kb on - strand, within ABZR87_RS07025at 1484.899 kb on - strand, within ABZR87_RS07025at 1484.899 kb on - strand, within ABZR87_RS07025at 1484.899 kb on - strand, within ABZR87_RS07025at 1484.899 kb on - strand, within ABZR87_RS07025at 1484.980 kb on + strand, within ABZR87_RS07025at 1484.980 kb on + strand, within ABZR87_RS07025at 1484.980 kb on + strand, within ABZR87_RS07025at 1484.980 kb on + strand, within ABZR87_RS07025at 1484.980 kb on + strand, within ABZR87_RS07025at 1484.980 kb on + strand, within ABZR87_RS07025at 1484.981 kb on - strand, within ABZR87_RS07025at 1485.040 kb on - strand, within ABZR87_RS07025at 1485.040 kb on - strand, within ABZR87_RS07025at 1485.163 kb on + strand, within ABZR87_RS07025at 1485.164 kb on - strand, within ABZR87_RS07025at 1485.193 kb on - strand, within ABZR87_RS07025at 1485.286 kb on + strand, within ABZR87_RS07025at 1485.287 kb on - strand, within ABZR87_RS07025at 1485.607 kb on + strand, within ABZR87_RS07025at 1485.608 kb on - strand, within ABZR87_RS07025at 1485.623 kb on + strand, within ABZR87_RS07025at 1485.623 kb on + strand, within ABZR87_RS07025at 1485.624 kb on - strand, within ABZR87_RS07025at 1485.624 kb on - strand, within ABZR87_RS07025at 1485.624 kb on - strand, within ABZR87_RS07025at 1485.624 kb on - strand, within ABZR87_RS07025at 1485.658 kb on + strandat 1485.724 kb on + strandat 1485.725 kb on - strandat 1485.725 kb on - strandat 1485.725 kb on - strandat 1485.741 kb on + strandat 1485.742 kb on - strandat 1485.742 kb on - strandat 1485.742 kb on - strandat 1485.742 kb on - strandat 1485.742 kb on - strandat 1485.799 kb on + strandat 1485.799 kb on + strandat 1485.800 kb on - strandat 1485.925 kb on + strand, within ABZR87_RS07030at 1486.115 kb on + strand, within ABZR87_RS07030at 1486.116 kb on - strand, within ABZR87_RS07030at 1486.154 kb on + strand, within ABZR87_RS07030at 1486.154 kb on + strand, within ABZR87_RS07030at 1486.297 kb on + strand, within ABZR87_RS07030at 1486.297 kb on + strand, within ABZR87_RS07030at 1486.297 kb on + strand, within ABZR87_RS07030at 1486.297 kb on + strand, within ABZR87_RS07030at 1486.297 kb on + strand, within ABZR87_RS07030at 1486.298 kb on - strand, within ABZR87_RS07030at 1486.298 kb on - strand, within ABZR87_RS07030at 1486.298 kb on - strand, within ABZR87_RS07030at 1486.344 kb on + strand, within ABZR87_RS07030at 1486.345 kb on - strand, within ABZR87_RS07030at 1486.345 kb on - strand, within ABZR87_RS07030at 1486.345 kb on - strand, within ABZR87_RS07030at 1486.345 kb on - strand, within ABZR87_RS07030at 1486.345 kb on - strand, within ABZR87_RS07030at 1486.519 kb on + strandat 1486.519 kb on + strandat 1486.519 kb on + strandat 1486.520 kb on - strandat 1486.543 kb on - strandat 1486.574 kb on + strandat 1486.574 kb on + strandat 1486.574 kb on + strandat 1486.574 kb on + strandat 1486.574 kb on + strandat 1486.575 kb on - strandat 1486.575 kb on - strandat 1486.591 kb on + strandat 1486.591 kb on + strandat 1486.591 kb on + strandat 1486.591 kb on + strandat 1486.615 kb on + strandat 1486.615 kb on + strandat 1486.640 kb on + strand, within ABZR87_RS07035at 1486.640 kb on + strand, within ABZR87_RS07035at 1486.640 kb on + strand, within ABZR87_RS07035at 1486.641 kb on - strand, within ABZR87_RS07035at 1486.664 kb on - strand, within ABZR87_RS07035at 1486.708 kb on + strand, within ABZR87_RS07035at 1486.708 kb on + strand, within ABZR87_RS07035at 1486.709 kb on - strand, within ABZR87_RS07035at 1486.709 kb on - strand, within ABZR87_RS07035at 1486.709 kb on - strand, within ABZR87_RS07035at 1486.709 kb on - strand, within ABZR87_RS07035at 1486.810 kb on + strand, within ABZR87_RS07035at 1486.810 kb on + strand, within ABZR87_RS07035at 1486.810 kb on + strand, within ABZR87_RS07035at 1486.811 kb on - strand, within ABZR87_RS07035at 1486.811 kb on - strand, within ABZR87_RS07035at 1486.811 kb on - strand, within ABZR87_RS07035at 1486.811 kb on - strand, within ABZR87_RS07035at 1486.813 kb on + strand, within ABZR87_RS07035at 1486.813 kb on + strand, within ABZR87_RS07035at 1486.814 kb on - strand, within ABZR87_RS07035at 1486.814 kb on - strand, within ABZR87_RS07035at 1486.939 kb on + strand, within ABZR87_RS07035at 1486.939 kb on + strand, within ABZR87_RS07035at 1486.939 kb on + strand, within ABZR87_RS07035at 1486.939 kb on + strand, within ABZR87_RS07035at 1486.940 kb on - strand, within ABZR87_RS07035at 1486.940 kb on - strand, within ABZR87_RS07035at 1486.940 kb on - strand, within ABZR87_RS07035at 1486.940 kb on - strand, within ABZR87_RS07035at 1486.940 kb on - strand, within ABZR87_RS07035at 1486.940 kb on - strand, within ABZR87_RS07035at 1486.940 kb on - strand, within ABZR87_RS07035at 1486.940 kb on - strand, within ABZR87_RS07035at 1487.073 kb on + strand, within ABZR87_RS07035at 1487.073 kb on + strand, within ABZR87_RS07035at 1487.073 kb on + strand, within ABZR87_RS07035at 1487.073 kb on + strand, within ABZR87_RS07035at 1487.074 kb on - strand, within ABZR87_RS07035at 1487.074 kb on - strand, within ABZR87_RS07035at 1487.074 kb on - strand, within ABZR87_RS07035at 1487.074 kb on - strand, within ABZR87_RS07035at 1487.141 kb on - strand, within ABZR87_RS07035at 1487.141 kb on - strand, within ABZR87_RS07035at 1487.279 kb on + strand, within ABZR87_RS07035at 1487.279 kb on + strand, within ABZR87_RS07035at 1487.279 kb on + strand, within ABZR87_RS07035at 1487.279 kb on + strand, within ABZR87_RS07035at 1487.279 kb on + strand, within ABZR87_RS07035at 1487.279 kb on + strand, within ABZR87_RS07035at 1487.279 kb on + strand, within ABZR87_RS07035at 1487.279 kb on + strand, within ABZR87_RS07035at 1487.279 kb on + strand, within ABZR87_RS07035at 1487.279 kb on + strand, within ABZR87_RS07035at 1487.279 kb on + strand, within ABZR87_RS07035at 1487.279 kb on + strand, within ABZR87_RS07035at 1487.279 kb on + strand, within ABZR87_RS07035at 1487.279 kb on + strand, within ABZR87_RS07035at 1487.279 kb on + strand, within ABZR87_RS07035at 1487.279 kb on + strand, within ABZR87_RS07035at 1487.279 kb on + strand, within ABZR87_RS07035at 1487.279 kb on + strand, within ABZR87_RS07035at 1487.280 kb on - strand, within ABZR87_RS07035at 1487.280 kb on - strand, within ABZR87_RS07035at 1487.280 kb on - strand, within ABZR87_RS07035at 1487.280 kb on - strand, within ABZR87_RS07035at 1487.280 kb on - strand, within ABZR87_RS07035at 1487.280 kb on - strand, within ABZR87_RS07035at 1487.281 kb on + strand, within ABZR87_RS07035at 1487.281 kb on + strand, within ABZR87_RS07035at 1487.282 kb on - strand, within ABZR87_RS07035at 1487.282 kb on - strand, within ABZR87_RS07035at 1487.282 kb on - strand, within ABZR87_RS07035at 1487.299 kb on + strand, within ABZR87_RS07035at 1487.300 kb on - strand, within ABZR87_RS07035at 1487.347 kb on + strandat 1487.347 kb on + strandat 1487.347 kb on + strandat 1487.347 kb on + strandat 1487.348 kb on - strandat 1487.350 kb on + strandat 1487.350 kb on + strandat 1487.351 kb on - strandat 1487.351 kb on - strandat 1487.351 kb on - strandat 1487.351 kb on - strandat 1487.402 kb on + strandat 1487.402 kb on + strandat 1487.403 kb on - strandat 1487.403 kb on - strandat 1487.403 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 2; outgrowth in LB
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1,484,802 + ABZR87_RS07025 0.18 +0.5
1,484,803 - ABZR87_RS07025 0.18 -1.3
1,484,805 + ABZR87_RS07025 0.18 +0.0
1,484,805 + ABZR87_RS07025 0.18 -3.6
1,484,805 + ABZR87_RS07025 0.18 +0.2
1,484,805 + ABZR87_RS07025 0.18 -0.6
1,484,805 + ABZR87_RS07025 0.18 -0.7
1,484,805 + ABZR87_RS07025 0.18 +0.6
1,484,806 - ABZR87_RS07025 0.18 -2.3
1,484,806 - ABZR87_RS07025 0.18 +1.0
1,484,895 + ABZR87_RS07025 0.26 -1.1
1,484,898 + ABZR87_RS07025 0.26 -1.5
1,484,899 - ABZR87_RS07025 0.26 -0.5
1,484,899 - ABZR87_RS07025 0.26 -0.0
1,484,899 - ABZR87_RS07025 0.26 -0.4
1,484,899 - ABZR87_RS07025 0.26 -0.1
1,484,899 - ABZR87_RS07025 0.26 -1.3
1,484,899 - ABZR87_RS07025 0.26 -0.7
1,484,899 - ABZR87_RS07025 0.26 -0.7
1,484,980 + ABZR87_RS07025 0.34 -2.4
1,484,980 + ABZR87_RS07025 0.34 +0.6
1,484,980 + ABZR87_RS07025 0.34 -0.2
1,484,980 + ABZR87_RS07025 0.34 -0.4
1,484,980 + ABZR87_RS07025 0.34 +0.3
1,484,980 + ABZR87_RS07025 0.34 +0.6
1,484,981 - ABZR87_RS07025 0.34 +1.2
1,485,040 - ABZR87_RS07025 0.39 -0.0
1,485,040 - ABZR87_RS07025 0.39 -0.4
1,485,163 + ABZR87_RS07025 0.49 +1.3
1,485,164 - ABZR87_RS07025 0.50 -0.4
1,485,193 - ABZR87_RS07025 0.52 +0.9
1,485,286 + ABZR87_RS07025 0.60 +0.2
1,485,287 - ABZR87_RS07025 0.60 -2.9
1,485,607 + ABZR87_RS07025 0.88 -0.4
1,485,608 - ABZR87_RS07025 0.88 +0.3
1,485,623 + ABZR87_RS07025 0.89 +0.4
1,485,623 + ABZR87_RS07025 0.89 -0.2
1,485,624 - ABZR87_RS07025 0.90 +0.5
1,485,624 - ABZR87_RS07025 0.90 +0.4
1,485,624 - ABZR87_RS07025 0.90 +0.2
1,485,624 - ABZR87_RS07025 0.90 +0.8
1,485,658 + +0.0
1,485,724 + +0.3
1,485,725 - -1.5
1,485,725 - -1.0
1,485,725 - +0.8
1,485,741 + +0.5
1,485,742 - -0.6
1,485,742 - -1.1
1,485,742 - -3.0
1,485,742 - +0.4
1,485,742 - +0.8
1,485,799 + -0.8
1,485,799 + +0.3
1,485,800 - +0.5
1,485,925 + ABZR87_RS07030 0.23 +0.1
1,486,115 + ABZR87_RS07030 0.52 -0.2
1,486,116 - ABZR87_RS07030 0.52 -0.7
1,486,154 + ABZR87_RS07030 0.58 +1.0
1,486,154 + ABZR87_RS07030 0.58 +1.0
1,486,297 + ABZR87_RS07030 0.80 -1.9
1,486,297 + ABZR87_RS07030 0.80 -0.6
1,486,297 + ABZR87_RS07030 0.80 +1.3
1,486,297 + ABZR87_RS07030 0.80 -2.7
1,486,297 + ABZR87_RS07030 0.80 +1.4
1,486,298 - ABZR87_RS07030 0.80 -2.8
1,486,298 - ABZR87_RS07030 0.80 -0.5
1,486,298 - ABZR87_RS07030 0.80 +1.3
1,486,344 + ABZR87_RS07030 0.87 -0.6
1,486,345 - ABZR87_RS07030 0.87 +0.7
1,486,345 - ABZR87_RS07030 0.87 -2.4
1,486,345 - ABZR87_RS07030 0.87 -1.1
1,486,345 - ABZR87_RS07030 0.87 -1.9
1,486,345 - ABZR87_RS07030 0.87 +0.0
1,486,519 + -0.3
1,486,519 + +0.2
1,486,519 + -0.4
1,486,520 - +1.7
1,486,543 - -0.4
1,486,574 + -1.4
1,486,574 + -0.8
1,486,574 + -1.4
1,486,574 + +0.6
1,486,574 + -0.1
1,486,575 - -0.3
1,486,575 - -1.9
1,486,591 + -1.6
1,486,591 + +1.6
1,486,591 + -1.7
1,486,591 + -0.1
1,486,615 + +0.2
1,486,615 + -0.5
1,486,640 + ABZR87_RS07035 0.12 -1.0
1,486,640 + ABZR87_RS07035 0.12 -0.6
1,486,640 + ABZR87_RS07035 0.12 -1.6
1,486,641 - ABZR87_RS07035 0.12 -0.4
1,486,664 - ABZR87_RS07035 0.15 +1.2
1,486,708 + ABZR87_RS07035 0.20 -1.3
1,486,708 + ABZR87_RS07035 0.20 -1.0
1,486,709 - ABZR87_RS07035 0.20 -0.1
1,486,709 - ABZR87_RS07035 0.20 -1.3
1,486,709 - ABZR87_RS07035 0.20 -0.1
1,486,709 - ABZR87_RS07035 0.20 -1.3
1,486,810 + ABZR87_RS07035 0.31 +0.4
1,486,810 + ABZR87_RS07035 0.31 -0.1
1,486,810 + ABZR87_RS07035 0.31 -1.3
1,486,811 - ABZR87_RS07035 0.31 -1.8
1,486,811 - ABZR87_RS07035 0.31 -0.9
1,486,811 - ABZR87_RS07035 0.31 -0.6
1,486,811 - ABZR87_RS07035 0.31 -1.6
1,486,813 + ABZR87_RS07035 0.31 +0.4
1,486,813 + ABZR87_RS07035 0.31 -1.3
1,486,814 - ABZR87_RS07035 0.31 -1.9
1,486,814 - ABZR87_RS07035 0.31 +0.3
1,486,939 + ABZR87_RS07035 0.45 -1.0
1,486,939 + ABZR87_RS07035 0.45 -1.3
1,486,939 + ABZR87_RS07035 0.45 -0.4
1,486,939 + ABZR87_RS07035 0.45 -0.7
1,486,940 - ABZR87_RS07035 0.46 -1.9
1,486,940 - ABZR87_RS07035 0.46 -2.1
1,486,940 - ABZR87_RS07035 0.46 -1.8
1,486,940 - ABZR87_RS07035 0.46 -0.9
1,486,940 - ABZR87_RS07035 0.46 -1.7
1,486,940 - ABZR87_RS07035 0.46 -0.9
1,486,940 - ABZR87_RS07035 0.46 +2.2
1,486,940 - ABZR87_RS07035 0.46 -2.2
1,487,073 + ABZR87_RS07035 0.60 -2.3
1,487,073 + ABZR87_RS07035 0.60 +0.0
1,487,073 + ABZR87_RS07035 0.60 +2.2
1,487,073 + ABZR87_RS07035 0.60 +1.2
1,487,074 - ABZR87_RS07035 0.61 +0.2
1,487,074 - ABZR87_RS07035 0.61 +1.2
1,487,074 - ABZR87_RS07035 0.61 -1.2
1,487,074 - ABZR87_RS07035 0.61 +1.2
1,487,141 - ABZR87_RS07035 0.68 -0.5
1,487,141 - ABZR87_RS07035 0.68 -1.5
1,487,279 + ABZR87_RS07035 0.83 -1.7
1,487,279 + ABZR87_RS07035 0.83 -0.9
1,487,279 + ABZR87_RS07035 0.83 -1.0
1,487,279 + ABZR87_RS07035 0.83 -1.0
1,487,279 + ABZR87_RS07035 0.83 -0.6
1,487,279 + ABZR87_RS07035 0.83 -0.1
1,487,279 + ABZR87_RS07035 0.83 -0.8
1,487,279 + ABZR87_RS07035 0.83 -1.0
1,487,279 + ABZR87_RS07035 0.83 +0.2
1,487,279 + ABZR87_RS07035 0.83 +0.0
1,487,279 + ABZR87_RS07035 0.83 -0.6
1,487,279 + ABZR87_RS07035 0.83 -0.8
1,487,279 + ABZR87_RS07035 0.83 -1.3
1,487,279 + ABZR87_RS07035 0.83 +2.2
1,487,279 + ABZR87_RS07035 0.83 -1.3
1,487,279 + ABZR87_RS07035 0.83 +3.2
1,487,279 + ABZR87_RS07035 0.83 -1.4
1,487,279 + ABZR87_RS07035 0.83 -1.8
1,487,280 - ABZR87_RS07035 0.84 -1.6
1,487,280 - ABZR87_RS07035 0.84 -1.8
1,487,280 - ABZR87_RS07035 0.84 -1.6
1,487,280 - ABZR87_RS07035 0.84 -2.8
1,487,280 - ABZR87_RS07035 0.84 -1.5
1,487,280 - ABZR87_RS07035 0.84 -1.4
1,487,281 + ABZR87_RS07035 0.84 +0.6
1,487,281 + ABZR87_RS07035 0.84 -0.9
1,487,282 - ABZR87_RS07035 0.84 +1.2
1,487,282 - ABZR87_RS07035 0.84 +1.2
1,487,282 - ABZR87_RS07035 0.84 -1.9
1,487,299 + ABZR87_RS07035 0.86 -1.1
1,487,300 - ABZR87_RS07035 0.86 -2.8
1,487,347 + +0.0
1,487,347 + +0.4
1,487,347 + +0.4
1,487,347 + -2.8
1,487,348 - -0.1
1,487,350 + -0.6
1,487,350 + -1.3
1,487,351 - -1.6
1,487,351 - -1.3
1,487,351 - -1.6
1,487,351 - +1.2
1,487,402 + -1.9
1,487,402 + -2.9
1,487,403 - -1.8
1,487,403 - +0.4
1,487,403 - -3.5

Or see this region's nucleotide sequence