Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05400

Experiment: soil EcoFAB sample 2; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	soil EcoFAB sample 2; outgrowth in LB
1,137,352	+				-1.7
1,137,353	-				-1.9
1,137,414	+				+0.8
1,137,480	+				-2.5
1,137,480	+				-1.1
1,137,480	+				-1.9
1,137,495	+				-0.1
1,137,532	-				-0.6
1,137,602	-		ABZR87_RS05395	0.12	-2.1
1,137,602	-		ABZR87_RS05395	0.12	+0.4
1,137,605	-		ABZR87_RS05395	0.12	+0.3
1,137,605	-		ABZR87_RS05395	0.12	+0.1
1,137,605	-		ABZR87_RS05395	0.12	-0.7
1,137,605	-		ABZR87_RS05395	0.12	-0.1
1,137,698	-		ABZR87_RS05395	0.24	-2.3
1,137,698	-		ABZR87_RS05395	0.24	-0.9
1,137,698	-		ABZR87_RS05395	0.24	-1.3
1,137,700	-		ABZR87_RS05395	0.24	+0.4
1,137,700	-		ABZR87_RS05395	0.24	-0.9
1,137,700	-		ABZR87_RS05395	0.24	-1.4
1,137,700	-		ABZR87_RS05395	0.24	-0.8
1,137,700	-		ABZR87_RS05395	0.24	-0.2
1,137,700	-		ABZR87_RS05395	0.24	+0.1
1,137,700	-		ABZR87_RS05395	0.24	-2.4
1,137,700	-		ABZR87_RS05395	0.24	+0.2
1,137,702	-		ABZR87_RS05395	0.25	-0.5
1,137,702	-		ABZR87_RS05395	0.25	-1.9
1,137,741	-		ABZR87_RS05395	0.29	-2.6
1,137,807	-		ABZR87_RS05395	0.38	-1.3
1,137,807	-		ABZR87_RS05395	0.38	+0.8
1,137,856	-		ABZR87_RS05395	0.44	+0.1
1,137,960	-		ABZR87_RS05395	0.57	-3.5
1,137,967	-		ABZR87_RS05395	0.57	-1.2
1,137,976	-		ABZR87_RS05395	0.59	-0.9
1,137,976	-		ABZR87_RS05395	0.59	-1.5
1,138,046	-		ABZR87_RS05395	0.67	-1.4
1,138,048	-		ABZR87_RS05395	0.68	-1.5
1,138,049	-		ABZR87_RS05395	0.68	-1.0
1,138,135	-		ABZR87_RS05395	0.78	-0.0
1,138,135	-		ABZR87_RS05395	0.78	-2.1
1,138,171	-		ABZR87_RS05395	0.83	+0.3
1,138,171	-		ABZR87_RS05395	0.83	+0.5
1,138,192	-		ABZR87_RS05395	0.85	-1.9
1,138,203	-		ABZR87_RS05395	0.87	-3.8
1,138,207	-		ABZR87_RS05395	0.87	+0.8
1,138,207	-		ABZR87_RS05395	0.87	-3.5
1,138,207	-		ABZR87_RS05395	0.87	-2.4
1,138,228	-				-2.2
1,138,234	-				-0.7
1,138,323	-				-1.6
1,138,374	+				+1.2
1,138,374	+				+0.3
1,138,374	+				+0.7
1,138,374	+				-0.6
1,138,375	-				+0.7
1,138,375	-				-0.5
1,138,567	+		ABZR87_RS05400	0.11	+0.3
1,138,567	+		ABZR87_RS05400	0.11	+0.1
1,138,567	+		ABZR87_RS05400	0.11	-0.9
1,138,567	+		ABZR87_RS05400	0.11	+1.6
1,138,567	+		ABZR87_RS05400	0.11	-1.8
1,138,568	-		ABZR87_RS05400	0.11	+0.4
1,138,568	-		ABZR87_RS05400	0.11	-0.7
1,138,568	-		ABZR87_RS05400	0.11	+0.0
1,138,568	-		ABZR87_RS05400	0.11	+0.2
1,138,568	-		ABZR87_RS05400	0.11	-1.7
1,138,568	-		ABZR87_RS05400	0.11	+1.2
1,138,598	+		ABZR87_RS05400	0.13	+1.2
1,138,599	-		ABZR87_RS05400	0.13	-2.4
1,138,599	-		ABZR87_RS05400	0.13	+0.0
1,138,789	+		ABZR87_RS05400	0.21	-1.3
1,138,789	+		ABZR87_RS05400	0.21	-0.1
1,138,789	+		ABZR87_RS05400	0.21	+0.9
1,138,789	+		ABZR87_RS05400	0.21	-0.2
1,138,790	-		ABZR87_RS05400	0.21	+0.8
1,138,790	-		ABZR87_RS05400	0.21	+1.2
1,138,791	+		ABZR87_RS05400	0.21	-3.0
1,138,791	+		ABZR87_RS05400	0.21	-0.2
1,138,791	+		ABZR87_RS05400	0.21	-0.4
1,138,791	+		ABZR87_RS05400	0.21	-0.3
1,138,792	-		ABZR87_RS05400	0.21	+0.2
1,138,792	-		ABZR87_RS05400	0.21	+0.5
1,138,802	+		ABZR87_RS05400	0.21	+0.2
1,138,859	-		ABZR87_RS05400	0.24	-2.3
1,138,859	-		ABZR87_RS05400	0.24	-0.7
1,138,878	+		ABZR87_RS05400	0.25	-2.4
1,138,895	-		ABZR87_RS05400	0.25	-0.1
1,138,938	-		ABZR87_RS05400	0.27	+0.4
1,138,967	-		ABZR87_RS05400	0.28	+0.9
1,139,009	+		ABZR87_RS05400	0.30	-0.8
1,139,010	-		ABZR87_RS05400	0.30	-0.6
1,139,041	-		ABZR87_RS05400	0.32	-1.3
1,139,059	-		ABZR87_RS05400	0.32	+0.5
1,139,062	+		ABZR87_RS05400	0.32	+0.7
1,139,062	+		ABZR87_RS05400	0.32	-2.5
1,139,069	+		ABZR87_RS05400	0.33	-1.0
1,139,070	-		ABZR87_RS05400	0.33	-0.5
1,139,070	-		ABZR87_RS05400	0.33	+0.1
1,139,100	-		ABZR87_RS05400	0.34	-0.2
1,139,100	-		ABZR87_RS05400	0.34	-1.5
1,139,104	-		ABZR87_RS05400	0.34	-2.0
1,139,167	+		ABZR87_RS05400	0.37	-1.2
1,139,178	-		ABZR87_RS05400	0.37	+0.0
1,139,268	-		ABZR87_RS05400	0.41	-0.8
1,139,268	-		ABZR87_RS05400	0.41	+1.1
1,139,268	-		ABZR87_RS05400	0.41	+1.4
1,139,295	+		ABZR87_RS05400	0.42	+0.4
1,139,295	+		ABZR87_RS05400	0.42	-0.4
1,139,295	+		ABZR87_RS05400	0.42	-0.6
1,139,296	-		ABZR87_RS05400	0.42	-1.4
1,139,296	-		ABZR87_RS05400	0.42	+0.1
1,139,340	+		ABZR87_RS05400	0.44	-0.0
1,139,340	+		ABZR87_RS05400	0.44	-2.5
1,139,341	-		ABZR87_RS05400	0.44	+0.1
1,139,341	-		ABZR87_RS05400	0.44	-2.2
1,139,435	+		ABZR87_RS05400	0.48	+0.6
1,139,531	+		ABZR87_RS05400	0.53	+0.6
1,139,536	+		ABZR87_RS05400	0.53	+0.3
1,139,536	+		ABZR87_RS05400	0.53	+0.7
1,139,537	-		ABZR87_RS05400	0.53	+0.1
1,139,541	-		ABZR87_RS05400	0.53	+0.6
1,139,624	+		ABZR87_RS05400	0.57	-0.3
1,139,625	-		ABZR87_RS05400	0.57	-0.5
1,139,625	-		ABZR87_RS05400	0.57	-0.3
1,139,630	+		ABZR87_RS05400	0.57	-0.1
1,139,631	-		ABZR87_RS05400	0.57	+0.3
1,139,631	-		ABZR87_RS05400	0.57	+0.6
1,139,631	-		ABZR87_RS05400	0.57	-0.4
1,139,643	-		ABZR87_RS05400	0.57	-0.1
1,139,648	-		ABZR87_RS05400	0.58	-0.2
1,139,699	-		ABZR87_RS05400	0.60	+0.3
1,139,732	+		ABZR87_RS05400	0.61	-3.8
1,139,754	-		ABZR87_RS05400	0.62	-0.3
1,139,849	+		ABZR87_RS05400	0.66	+0.0
1,139,849	+		ABZR87_RS05400	0.66	+0.6
1,139,849	+		ABZR87_RS05400	0.66	-1.5
1,139,873	+		ABZR87_RS05400	0.67	-0.6
1,139,873	+		ABZR87_RS05400	0.67	+0.5
1,139,874	-		ABZR87_RS05400	0.67	-0.6
1,139,874	-		ABZR87_RS05400	0.67	-0.4
1,139,874	-		ABZR87_RS05400	0.67	-0.6
1,139,885	+		ABZR87_RS05400	0.68	+0.2
1,139,885	+		ABZR87_RS05400	0.68	-0.3
1,139,896	+		ABZR87_RS05400	0.68	-0.2
1,139,896	+		ABZR87_RS05400	0.68	+1.1
1,139,896	+		ABZR87_RS05400	0.68	+2.5
1,139,897	-		ABZR87_RS05400	0.68	+1.1
1,139,910	-		ABZR87_RS05400	0.69	+0.1
1,139,935	+		ABZR87_RS05400	0.70	-0.4
1,139,936	-		ABZR87_RS05400	0.70	-1.5
1,139,939	+		ABZR87_RS05400	0.70	-0.4
1,139,940	-		ABZR87_RS05400	0.70	-0.3
1,139,951	+		ABZR87_RS05400	0.71	-0.3
1,139,970	+		ABZR87_RS05400	0.71	+0.8
1,139,991	+		ABZR87_RS05400	0.72	+0.2
1,139,992	-		ABZR87_RS05400	0.72	-1.0
1,139,992	-		ABZR87_RS05400	0.72	-0.4
1,140,069	-		ABZR87_RS05400	0.76	+1.6
1,140,069	-		ABZR87_RS05400	0.76	+0.6
1,140,089	+		ABZR87_RS05400	0.76	-0.6
1,140,189	-		ABZR87_RS05400	0.81	+0.3
1,140,251	+		ABZR87_RS05400	0.83	+0.1
1,140,252	-		ABZR87_RS05400	0.83	-0.7
1,140,279	-		ABZR87_RS05400	0.85	+0.7
1,140,340	+		ABZR87_RS05400	0.87	+1.9
1,140,341	-		ABZR87_RS05400	0.87	-0.1
1,140,517	+				+0.1
1,140,530	+				+0.5
1,140,568	+				-0.6
1,140,591	-				-0.3
1,140,636	+				-0.5
1,140,637	-				-3.0
1,140,637	-				-3.5
1,140,642	+				+2.1
1,140,643	-				-1.0
1,140,724	+				-0.4
1,140,725	-				-1.2
1,140,734	+				-2.7
1,140,735	-				-1.5
1,140,746	+				-0.4
1,140,746	+				+0.3
1,140,747	-				+0.6
1,140,806	+				+0.8
1,140,822	+				-2.0
1,140,823	-				-0.9
1,140,824	+				+0.0
1,140,824	+				-2.3
1,140,824	+				-0.4
1,140,825	-				-0.9
1,140,825	-				-1.5
1,140,825	-				+1.5
1,140,832	-				-2.0
1,140,859	+				-0.4
1,140,859	+				+0.7
1,140,942	+		ABZR87_RS05405	0.24	-1.2
1,140,942	+		ABZR87_RS05405	0.24	-0.9
1,140,943	-		ABZR87_RS05405	0.24	+1.3
1,140,943	-		ABZR87_RS05405	0.24	+0.1
1,140,974	-		ABZR87_RS05405	0.31	+0.4
1,141,009	-		ABZR87_RS05405	0.38	-3.6
1,141,118	+		ABZR87_RS05405	0.61	-0.3
1,141,118	+		ABZR87_RS05405	0.61	-1.0
1,141,118	+		ABZR87_RS05405	0.61	+0.0
1,141,310	+				+0.5
1,141,310	+				+1.6
1,141,326	+				+0.6
1,141,326	+				-2.1
1,141,327	-				+0.3
1,141,327	-				-0.2
1,141,374	-				+0.9
1,141,430	-				+0.4
1,141,430	-				+0.8
1,141,502	+				-1.5
1,141,502	+				-0.5
1,141,503	-				+0.6
1,141,503	-				+0.4
1,141,503	-				+0.7
1,141,503	-				-0.8
1,141,544	+				-1.1
1,141,544	+				+1.0
1,141,544	+				-0.1
1,141,545	-				+0.5
1,141,629	+				-2.1
1,141,629	+				-0.1
1,141,629	+				-0.8
1,141,629	+				-0.3
1,141,629	+				+0.3
1,141,629	+				+0.8
1,141,630	-				-0.4
1,141,630	-				-0.2