Experiment: soil EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04855 and ABZR87_RS04860 are separated by 55 nucleotides ABZR87_RS04860 and ABZR87_RS04865 are separated by 10 nucleotides ABZR87_RS04865 and ABZR87_RS04870 are separated by 29 nucleotides
ABZR87_RS04855: ABZR87_RS04855 - adenosylhomocysteinase, at 1,019,576 to 1,021,000
_RS04855
ABZR87_RS04860: ABZR87_RS04860 - phage holin family protein, at 1,021,056 to 1,021,400
_RS04860
ABZR87_RS04865: ABZR87_RS04865 - methylenetetrahydrofolate reductase [NAD(P)H], at 1,021,411 to 1,022,241
_RS04865
ABZR87_RS04870: ABZR87_RS04870 - TfoX/Sxy family protein, at 1,022,271 to 1,022,729
_RS04870
Position (kb) 1021
1022 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1020.998 kb on + strand at 1020.998 kb on + strand at 1020.999 kb on - strand at 1020.999 kb on - strand at 1020.999 kb on - strand at 1021.006 kb on - strand at 1021.006 kb on - strand at 1021.110 kb on + strand, within ABZR87_RS04860 at 1021.110 kb on + strand, within ABZR87_RS04860 at 1021.111 kb on - strand, within ABZR87_RS04860 at 1021.111 kb on - strand, within ABZR87_RS04860 at 1021.111 kb on - strand, within ABZR87_RS04860 at 1021.350 kb on + strand, within ABZR87_RS04860 at 1021.350 kb on + strand, within ABZR87_RS04860 at 1021.350 kb on + strand, within ABZR87_RS04860 at 1021.351 kb on - strand, within ABZR87_RS04860 at 1021.351 kb on - strand, within ABZR87_RS04860 at 1021.351 kb on - strand, within ABZR87_RS04860 at 1021.398 kb on + strand at 1021.398 kb on + strand at 1021.398 kb on + strand at 1021.398 kb on + strand at 1021.399 kb on - strand at 1021.399 kb on - strand at 1021.662 kb on + strand, within ABZR87_RS04865 at 1021.662 kb on + strand, within ABZR87_RS04865 at 1021.662 kb on + strand, within ABZR87_RS04865 at 1021.663 kb on - strand, within ABZR87_RS04865 at 1021.663 kb on - strand, within ABZR87_RS04865 at 1021.663 kb on - strand, within ABZR87_RS04865 at 1021.663 kb on - strand, within ABZR87_RS04865 at 1021.663 kb on - strand, within ABZR87_RS04865 at 1021.663 kb on - strand, within ABZR87_RS04865 at 1021.663 kb on - strand, within ABZR87_RS04865 at 1021.663 kb on - strand, within ABZR87_RS04865 at 1021.663 kb on - strand, within ABZR87_RS04865 at 1021.663 kb on - strand, within ABZR87_RS04865 at 1021.666 kb on + strand, within ABZR87_RS04865 at 1021.825 kb on + strand, within ABZR87_RS04865 at 1021.826 kb on - strand, within ABZR87_RS04865 at 1021.912 kb on + strand, within ABZR87_RS04865 at 1021.912 kb on + strand, within ABZR87_RS04865 at 1021.912 kb on + strand, within ABZR87_RS04865 at 1021.913 kb on - strand, within ABZR87_RS04865 at 1021.913 kb on - strand, within ABZR87_RS04865 at 1021.933 kb on + strand, within ABZR87_RS04865 at 1022.185 kb on + strand at 1022.186 kb on - strand at 1022.186 kb on - strand at 1022.239 kb on + strand at 1022.382 kb on + strand, within ABZR87_RS04870 at 1022.382 kb on + strand, within ABZR87_RS04870 at 1022.386 kb on - strand, within ABZR87_RS04870 at 1022.386 kb on - strand, within ABZR87_RS04870
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 2; outgrowth in LB remove 1,020,998 + +2.3 1,020,998 + -2.5 1,020,999 - +1.0 1,020,999 - +0.3 1,020,999 - +0.6 1,021,006 - +1.5 1,021,006 - +0.8 1,021,110 + ABZR87_RS04860 0.16 +0.2 1,021,110 + ABZR87_RS04860 0.16 +0.7 1,021,111 - ABZR87_RS04860 0.16 -0.5 1,021,111 - ABZR87_RS04860 0.16 -0.7 1,021,111 - ABZR87_RS04860 0.16 -0.8 1,021,350 + ABZR87_RS04860 0.85 -0.3 1,021,350 + ABZR87_RS04860 0.85 -1.2 1,021,350 + ABZR87_RS04860 0.85 +0.6 1,021,351 - ABZR87_RS04860 0.86 +0.1 1,021,351 - ABZR87_RS04860 0.86 +0.1 1,021,351 - ABZR87_RS04860 0.86 -0.9 1,021,398 + +0.7 1,021,398 + +0.1 1,021,398 + +1.4 1,021,398 + -1.8 1,021,399 - +3.4 1,021,399 - +0.4 1,021,662 + ABZR87_RS04865 0.30 -1.9 1,021,662 + ABZR87_RS04865 0.30 -0.1 1,021,662 + ABZR87_RS04865 0.30 -0.6 1,021,663 - ABZR87_RS04865 0.30 -1.8 1,021,663 - ABZR87_RS04865 0.30 -1.6 1,021,663 - ABZR87_RS04865 0.30 -0.7 1,021,663 - ABZR87_RS04865 0.30 -1.5 1,021,663 - ABZR87_RS04865 0.30 -1.9 1,021,663 - ABZR87_RS04865 0.30 -1.3 1,021,663 - ABZR87_RS04865 0.30 -1.2 1,021,663 - ABZR87_RS04865 0.30 +1.5 1,021,663 - ABZR87_RS04865 0.30 +1.5 1,021,663 - ABZR87_RS04865 0.30 -1.1 1,021,666 + ABZR87_RS04865 0.31 -1.5 1,021,825 + ABZR87_RS04865 0.50 -0.7 1,021,826 - ABZR87_RS04865 0.50 +0.1 1,021,912 + ABZR87_RS04865 0.60 -0.1 1,021,912 + ABZR87_RS04865 0.60 -0.1 1,021,912 + ABZR87_RS04865 0.60 -1.4 1,021,913 - ABZR87_RS04865 0.60 -1.0 1,021,913 - ABZR87_RS04865 0.60 -1.2 1,021,933 + ABZR87_RS04865 0.63 -2.0 1,022,185 + +0.1 1,022,186 - -2.1 1,022,186 - -0.4 1,022,239 + +0.4 1,022,382 + ABZR87_RS04870 0.24 +0.5 1,022,382 + ABZR87_RS04870 0.24 -0.0 1,022,386 - ABZR87_RS04870 0.25 -0.1 1,022,386 - ABZR87_RS04870 0.25 +0.0
Or see this region's nucleotide sequence