Experiment: soil EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04520 and ABZR87_RS04525 are separated by 655 nucleotides ABZR87_RS04525 and ABZR87_RS04530 are separated by 137 nucleotides
ABZR87_RS04520: ABZR87_RS04520 - potassium-transporting ATPase subunit KdpC, at 943,251 to 943,874
_RS04520
ABZR87_RS04525: ABZR87_RS04525 - sensor histidine kinase KdpD, at 944,530 to 947,346
_RS04525
ABZR87_RS04530: ABZR87_RS04530 - MetQ/NlpA family lipoprotein, at 947,484 to 948,290
_RS04530
Position (kb) 944
945
946
947
948 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 943.533 kb on + strand, within ABZR87_RS04520 at 943.533 kb on + strand, within ABZR87_RS04520 at 943.533 kb on + strand, within ABZR87_RS04520 at 943.534 kb on - strand, within ABZR87_RS04520 at 943.534 kb on - strand, within ABZR87_RS04520 at 943.571 kb on + strand, within ABZR87_RS04520 at 943.700 kb on + strand, within ABZR87_RS04520 at 943.700 kb on + strand, within ABZR87_RS04520 at 943.701 kb on - strand, within ABZR87_RS04520 at 943.701 kb on - strand, within ABZR87_RS04520 at 943.720 kb on - strand, within ABZR87_RS04520 at 943.720 kb on - strand, within ABZR87_RS04520 at 943.826 kb on + strand at 943.826 kb on + strand at 943.826 kb on + strand at 943.827 kb on - strand at 943.979 kb on + strand at 944.222 kb on + strand at 944.222 kb on + strand at 944.223 kb on - strand at 944.297 kb on - strand at 944.297 kb on - strand at 944.297 kb on - strand at 944.297 kb on - strand at 944.522 kb on + strand at 944.522 kb on + strand at 944.522 kb on + strand at 944.523 kb on - strand at 944.523 kb on - strand at 944.620 kb on + strand at 944.621 kb on - strand at 944.621 kb on - strand at 944.642 kb on + strand at 944.642 kb on + strand at 944.642 kb on + strand at 944.643 kb on - strand at 944.654 kb on - strand at 944.654 kb on - strand at 944.791 kb on + strand at 944.792 kb on - strand at 944.792 kb on - strand at 944.792 kb on - strand at 944.792 kb on - strand at 945.127 kb on + strand, within ABZR87_RS04525 at 945.127 kb on + strand, within ABZR87_RS04525 at 945.127 kb on + strand, within ABZR87_RS04525 at 945.127 kb on + strand, within ABZR87_RS04525 at 945.128 kb on - strand, within ABZR87_RS04525 at 945.128 kb on - strand, within ABZR87_RS04525 at 945.128 kb on - strand, within ABZR87_RS04525 at 945.128 kb on - strand, within ABZR87_RS04525 at 945.128 kb on - strand, within ABZR87_RS04525 at 945.128 kb on - strand, within ABZR87_RS04525 at 945.128 kb on - strand, within ABZR87_RS04525 at 945.128 kb on - strand, within ABZR87_RS04525 at 945.247 kb on + strand, within ABZR87_RS04525 at 945.526 kb on + strand, within ABZR87_RS04525 at 945.526 kb on + strand, within ABZR87_RS04525 at 945.527 kb on - strand, within ABZR87_RS04525 at 945.527 kb on - strand, within ABZR87_RS04525 at 945.527 kb on - strand, within ABZR87_RS04525 at 945.528 kb on + strand, within ABZR87_RS04525 at 945.528 kb on + strand, within ABZR87_RS04525 at 945.529 kb on - strand, within ABZR87_RS04525 at 945.529 kb on - strand, within ABZR87_RS04525 at 945.826 kb on + strand, within ABZR87_RS04525 at 945.826 kb on + strand, within ABZR87_RS04525 at 945.827 kb on - strand, within ABZR87_RS04525 at 945.827 kb on - strand, within ABZR87_RS04525 at 945.827 kb on - strand, within ABZR87_RS04525 at 945.827 kb on - strand, within ABZR87_RS04525 at 945.827 kb on - strand, within ABZR87_RS04525 at 945.844 kb on + strand, within ABZR87_RS04525 at 945.844 kb on + strand, within ABZR87_RS04525 at 945.844 kb on + strand, within ABZR87_RS04525 at 945.845 kb on - strand, within ABZR87_RS04525 at 945.845 kb on - strand, within ABZR87_RS04525 at 945.845 kb on - strand, within ABZR87_RS04525 at 945.845 kb on - strand, within ABZR87_RS04525 at 945.845 kb on - strand, within ABZR87_RS04525 at 946.051 kb on + strand, within ABZR87_RS04525 at 946.051 kb on + strand, within ABZR87_RS04525 at 946.052 kb on - strand, within ABZR87_RS04525 at 946.168 kb on + strand, within ABZR87_RS04525 at 946.168 kb on + strand, within ABZR87_RS04525 at 946.168 kb on + strand, within ABZR87_RS04525 at 946.169 kb on - strand, within ABZR87_RS04525 at 946.169 kb on - strand, within ABZR87_RS04525 at 946.384 kb on + strand, within ABZR87_RS04525 at 946.384 kb on + strand, within ABZR87_RS04525 at 946.384 kb on + strand, within ABZR87_RS04525 at 946.385 kb on - strand, within ABZR87_RS04525 at 946.419 kb on + strand, within ABZR87_RS04525 at 946.419 kb on + strand, within ABZR87_RS04525 at 946.419 kb on + strand, within ABZR87_RS04525 at 946.420 kb on - strand, within ABZR87_RS04525 at 946.444 kb on + strand, within ABZR87_RS04525 at 946.444 kb on + strand, within ABZR87_RS04525 at 946.444 kb on + strand, within ABZR87_RS04525 at 946.444 kb on + strand, within ABZR87_RS04525 at 946.444 kb on + strand, within ABZR87_RS04525 at 946.444 kb on + strand, within ABZR87_RS04525 at 946.444 kb on + strand, within ABZR87_RS04525 at 946.444 kb on + strand, within ABZR87_RS04525 at 946.444 kb on + strand, within ABZR87_RS04525 at 946.444 kb on + strand, within ABZR87_RS04525 at 946.445 kb on - strand, within ABZR87_RS04525 at 946.445 kb on - strand, within ABZR87_RS04525 at 946.588 kb on + strand, within ABZR87_RS04525 at 946.588 kb on + strand, within ABZR87_RS04525 at 946.588 kb on + strand, within ABZR87_RS04525 at 946.588 kb on + strand, within ABZR87_RS04525 at 946.588 kb on + strand, within ABZR87_RS04525 at 946.589 kb on - strand, within ABZR87_RS04525 at 946.589 kb on - strand, within ABZR87_RS04525 at 947.370 kb on + strand at 947.370 kb on + strand at 947.371 kb on - strand at 947.371 kb on - strand at 947.371 kb on - strand at 947.371 kb on - strand at 947.371 kb on - strand at 947.398 kb on + strand at 947.399 kb on - strand at 947.410 kb on + strand at 947.411 kb on - strand at 947.677 kb on - strand, within ABZR87_RS04530 at 947.772 kb on + strand, within ABZR87_RS04530 at 947.772 kb on + strand, within ABZR87_RS04530 at 947.773 kb on - strand, within ABZR87_RS04530 at 947.773 kb on - strand, within ABZR87_RS04530 at 947.773 kb on - strand, within ABZR87_RS04530 at 947.773 kb on - strand, within ABZR87_RS04530 at 947.799 kb on + strand, within ABZR87_RS04530 at 947.799 kb on + strand, within ABZR87_RS04530 at 947.799 kb on + strand, within ABZR87_RS04530 at 947.799 kb on + strand, within ABZR87_RS04530 at 947.800 kb on - strand, within ABZR87_RS04530 at 947.800 kb on - strand, within ABZR87_RS04530 at 947.800 kb on - strand, within ABZR87_RS04530 at 947.800 kb on - strand, within ABZR87_RS04530 at 947.800 kb on - strand, within ABZR87_RS04530 at 947.800 kb on - strand, within ABZR87_RS04530 at 947.800 kb on - strand, within ABZR87_RS04530 at 947.800 kb on - strand, within ABZR87_RS04530 at 947.820 kb on + strand, within ABZR87_RS04530 at 947.820 kb on + strand, within ABZR87_RS04530 at 947.821 kb on - strand, within ABZR87_RS04530 at 947.821 kb on - strand, within ABZR87_RS04530 at 948.087 kb on + strand, within ABZR87_RS04530 at 948.088 kb on - strand, within ABZR87_RS04530 at 948.154 kb on - strand, within ABZR87_RS04530 at 948.222 kb on + strand at 948.222 kb on + strand at 948.223 kb on - strand at 948.223 kb on - strand at 948.288 kb on + strand at 948.289 kb on - strand at 948.301 kb on + strand at 948.301 kb on + strand at 948.302 kb on - strand at 948.313 kb on + strand at 948.313 kb on + strand at 948.314 kb on - strand at 948.314 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 2; outgrowth in LB remove 943,533 + ABZR87_RS04520 0.45 -2.2 943,533 + ABZR87_RS04520 0.45 -1.0 943,533 + ABZR87_RS04520 0.45 +0.4 943,534 - ABZR87_RS04520 0.45 -2.3 943,534 - ABZR87_RS04520 0.45 -2.2 943,571 + ABZR87_RS04520 0.51 -0.6 943,700 + ABZR87_RS04520 0.72 -0.3 943,700 + ABZR87_RS04520 0.72 -0.8 943,701 - ABZR87_RS04520 0.72 -0.2 943,701 - ABZR87_RS04520 0.72 -0.1 943,720 - ABZR87_RS04520 0.75 +0.5 943,720 - ABZR87_RS04520 0.75 -0.2 943,826 + +0.1 943,826 + +0.1 943,826 + +2.1 943,827 - +0.8 943,979 + -0.2 944,222 + -0.4 944,222 + -1.5 944,223 - -2.7 944,297 - +0.5 944,297 - +0.9 944,297 - -0.9 944,297 - +0.4 944,522 + +0.6 944,522 + +1.0 944,522 + +0.2 944,523 - +0.4 944,523 - -0.9 944,620 + -1.2 944,621 - -0.2 944,621 - -1.3 944,642 + +1.9 944,642 + -0.7 944,642 + -0.4 944,643 - +0.1 944,654 - -0.3 944,654 - +0.8 944,791 + -1.8 944,792 - -0.2 944,792 - +0.8 944,792 - +0.6 944,792 - -1.0 945,127 + ABZR87_RS04525 0.21 -0.3 945,127 + ABZR87_RS04525 0.21 -1.9 945,127 + ABZR87_RS04525 0.21 +0.0 945,127 + ABZR87_RS04525 0.21 +1.0 945,128 - ABZR87_RS04525 0.21 +0.2 945,128 - ABZR87_RS04525 0.21 -2.4 945,128 - ABZR87_RS04525 0.21 -0.1 945,128 - ABZR87_RS04525 0.21 +0.2 945,128 - ABZR87_RS04525 0.21 -1.1 945,128 - ABZR87_RS04525 0.21 +0.2 945,128 - ABZR87_RS04525 0.21 +0.0 945,128 - ABZR87_RS04525 0.21 +0.7 945,247 + ABZR87_RS04525 0.25 +1.1 945,526 + ABZR87_RS04525 0.35 +0.7 945,526 + ABZR87_RS04525 0.35 -0.1 945,527 - ABZR87_RS04525 0.35 +0.6 945,527 - ABZR87_RS04525 0.35 -0.5 945,527 - ABZR87_RS04525 0.35 +3.1 945,528 + ABZR87_RS04525 0.35 +0.8 945,528 + ABZR87_RS04525 0.35 +0.4 945,529 - ABZR87_RS04525 0.35 -2.0 945,529 - ABZR87_RS04525 0.35 +0.8 945,826 + ABZR87_RS04525 0.46 -1.0 945,826 + ABZR87_RS04525 0.46 -0.5 945,827 - ABZR87_RS04525 0.46 -0.8 945,827 - ABZR87_RS04525 0.46 -0.0 945,827 - ABZR87_RS04525 0.46 +1.5 945,827 - ABZR87_RS04525 0.46 +0.7 945,827 - ABZR87_RS04525 0.46 -1.3 945,844 + ABZR87_RS04525 0.47 -0.7 945,844 + ABZR87_RS04525 0.47 +0.1 945,844 + ABZR87_RS04525 0.47 -2.6 945,845 - ABZR87_RS04525 0.47 -0.1 945,845 - ABZR87_RS04525 0.47 -0.8 945,845 - ABZR87_RS04525 0.47 -1.5 945,845 - ABZR87_RS04525 0.47 -0.4 945,845 - ABZR87_RS04525 0.47 +0.9 946,051 + ABZR87_RS04525 0.54 +0.2 946,051 + ABZR87_RS04525 0.54 +0.1 946,052 - ABZR87_RS04525 0.54 -2.5 946,168 + ABZR87_RS04525 0.58 +0.7 946,168 + ABZR87_RS04525 0.58 +0.8 946,168 + ABZR87_RS04525 0.58 -3.3 946,169 - ABZR87_RS04525 0.58 +0.8 946,169 - ABZR87_RS04525 0.58 -0.3 946,384 + ABZR87_RS04525 0.66 +0.8 946,384 + ABZR87_RS04525 0.66 -0.1 946,384 + ABZR87_RS04525 0.66 -0.4 946,385 - ABZR87_RS04525 0.66 -1.2 946,419 + ABZR87_RS04525 0.67 -0.8 946,419 + ABZR87_RS04525 0.67 +0.5 946,419 + ABZR87_RS04525 0.67 -0.9 946,420 - ABZR87_RS04525 0.67 -1.8 946,444 + ABZR87_RS04525 0.68 -4.3 946,444 + ABZR87_RS04525 0.68 -1.2 946,444 + ABZR87_RS04525 0.68 -0.2 946,444 + ABZR87_RS04525 0.68 -0.4 946,444 + ABZR87_RS04525 0.68 +0.7 946,444 + ABZR87_RS04525 0.68 +0.7 946,444 + ABZR87_RS04525 0.68 -0.4 946,444 + ABZR87_RS04525 0.68 +0.0 946,444 + ABZR87_RS04525 0.68 +1.8 946,444 + ABZR87_RS04525 0.68 -0.5 946,445 - ABZR87_RS04525 0.68 +0.8 946,445 - ABZR87_RS04525 0.68 -0.7 946,588 + ABZR87_RS04525 0.73 +0.9 946,588 + ABZR87_RS04525 0.73 +1.6 946,588 + ABZR87_RS04525 0.73 +1.0 946,588 + ABZR87_RS04525 0.73 -3.6 946,588 + ABZR87_RS04525 0.73 -0.6 946,589 - ABZR87_RS04525 0.73 +0.1 946,589 - ABZR87_RS04525 0.73 -2.0 947,370 + +0.3 947,370 + -1.4 947,371 - -0.2 947,371 - -0.1 947,371 - -0.0 947,371 - +1.3 947,371 - +1.1 947,398 + -0.8 947,399 - -0.7 947,410 + -0.6 947,411 - -1.3 947,677 - ABZR87_RS04530 0.24 -2.5 947,772 + ABZR87_RS04530 0.36 +4.1 947,772 + ABZR87_RS04530 0.36 +0.2 947,773 - ABZR87_RS04530 0.36 -1.1 947,773 - ABZR87_RS04530 0.36 -1.4 947,773 - ABZR87_RS04530 0.36 +1.2 947,773 - ABZR87_RS04530 0.36 -0.9 947,799 + ABZR87_RS04530 0.39 +0.4 947,799 + ABZR87_RS04530 0.39 -0.3 947,799 + ABZR87_RS04530 0.39 -0.6 947,799 + ABZR87_RS04530 0.39 +1.2 947,800 - ABZR87_RS04530 0.39 -1.0 947,800 - ABZR87_RS04530 0.39 +1.1 947,800 - ABZR87_RS04530 0.39 +0.6 947,800 - ABZR87_RS04530 0.39 +1.6 947,800 - ABZR87_RS04530 0.39 +1.2 947,800 - ABZR87_RS04530 0.39 -0.4 947,800 - ABZR87_RS04530 0.39 -0.1 947,800 - ABZR87_RS04530 0.39 +1.1 947,820 + ABZR87_RS04530 0.42 -3.2 947,820 + ABZR87_RS04530 0.42 -0.4 947,821 - ABZR87_RS04530 0.42 +0.5 947,821 - ABZR87_RS04530 0.42 -1.2 948,087 + ABZR87_RS04530 0.75 +0.4 948,088 - ABZR87_RS04530 0.75 +0.4 948,154 - ABZR87_RS04530 0.83 +0.6 948,222 + -0.5 948,222 + -0.8 948,223 - -0.6 948,223 - +0.2 948,288 + -1.0 948,289 - +1.4 948,301 + +0.8 948,301 + -0.5 948,302 - +0.6 948,313 + -0.4 948,313 + +1.3 948,314 - +2.1 948,314 - -2.2
Or see this region's nucleotide sequence