Experiment: soil EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03960 and ABZR87_RS03965 are separated by 198 nucleotides ABZR87_RS03965 and ABZR87_RS03970 are separated by 130 nucleotides
ABZR87_RS03960: ABZR87_RS03960 - cation:proton antiporter, at 825,293 to 826,516
_RS03960
ABZR87_RS03965: ABZR87_RS03965 - branched-chain amino acid ABC transporter substrate-binding protein, at 826,715 to 827,860
_RS03965
ABZR87_RS03970: ABZR87_RS03970 - trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase, at 827,991 to 831,983
_RS03970
Position (kb) 826
827
828 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 825.825 kb on + strand, within ABZR87_RS03960 at 825.852 kb on + strand, within ABZR87_RS03960 at 825.852 kb on + strand, within ABZR87_RS03960 at 825.852 kb on + strand, within ABZR87_RS03960 at 825.852 kb on + strand, within ABZR87_RS03960 at 825.853 kb on - strand, within ABZR87_RS03960 at 825.853 kb on - strand, within ABZR87_RS03960 at 825.853 kb on - strand, within ABZR87_RS03960 at 825.853 kb on - strand, within ABZR87_RS03960 at 825.853 kb on - strand, within ABZR87_RS03960 at 825.912 kb on + strand, within ABZR87_RS03960 at 825.913 kb on - strand, within ABZR87_RS03960 at 825.949 kb on - strand, within ABZR87_RS03960 at 825.955 kb on + strand, within ABZR87_RS03960 at 825.955 kb on + strand, within ABZR87_RS03960 at 825.996 kb on + strand, within ABZR87_RS03960 at 825.996 kb on + strand, within ABZR87_RS03960 at 825.996 kb on + strand, within ABZR87_RS03960 at 825.996 kb on + strand, within ABZR87_RS03960 at 825.996 kb on + strand, within ABZR87_RS03960 at 825.996 kb on + strand, within ABZR87_RS03960 at 825.996 kb on + strand, within ABZR87_RS03960 at 825.997 kb on - strand, within ABZR87_RS03960 at 825.997 kb on - strand, within ABZR87_RS03960 at 825.997 kb on - strand, within ABZR87_RS03960 at 826.369 kb on - strand, within ABZR87_RS03960 at 826.519 kb on + strand at 826.585 kb on - strand at 826.591 kb on + strand at 826.688 kb on - strand at 826.716 kb on + strand at 826.717 kb on - strand at 826.717 kb on - strand at 826.717 kb on - strand at 826.767 kb on + strand at 826.767 kb on + strand at 826.767 kb on + strand at 826.767 kb on + strand at 826.767 kb on + strand at 826.768 kb on - strand at 826.768 kb on - strand at 826.809 kb on + strand at 826.809 kb on + strand at 826.810 kb on - strand at 826.810 kb on - strand at 826.815 kb on + strand at 826.815 kb on + strand at 826.816 kb on - strand at 826.816 kb on - strand at 826.816 kb on - strand at 826.816 kb on - strand at 826.816 kb on - strand at 826.866 kb on + strand, within ABZR87_RS03965 at 826.866 kb on + strand, within ABZR87_RS03965 at 826.866 kb on + strand, within ABZR87_RS03965 at 826.867 kb on - strand, within ABZR87_RS03965 at 826.867 kb on - strand, within ABZR87_RS03965 at 826.867 kb on - strand, within ABZR87_RS03965 at 826.929 kb on + strand, within ABZR87_RS03965 at 826.929 kb on + strand, within ABZR87_RS03965 at 826.930 kb on - strand, within ABZR87_RS03965 at 826.930 kb on - strand, within ABZR87_RS03965 at 826.930 kb on - strand, within ABZR87_RS03965 at 826.936 kb on - strand, within ABZR87_RS03965 at 826.944 kb on + strand, within ABZR87_RS03965 at 826.944 kb on + strand, within ABZR87_RS03965 at 826.944 kb on + strand, within ABZR87_RS03965 at 826.944 kb on + strand, within ABZR87_RS03965 at 826.945 kb on - strand, within ABZR87_RS03965 at 826.977 kb on + strand, within ABZR87_RS03965 at 826.977 kb on + strand, within ABZR87_RS03965 at 826.977 kb on + strand, within ABZR87_RS03965 at 826.989 kb on + strand, within ABZR87_RS03965 at 826.989 kb on + strand, within ABZR87_RS03965 at 826.989 kb on + strand, within ABZR87_RS03965 at 826.989 kb on + strand, within ABZR87_RS03965 at 826.989 kb on + strand, within ABZR87_RS03965 at 826.989 kb on + strand, within ABZR87_RS03965 at 826.989 kb on + strand, within ABZR87_RS03965 at 826.989 kb on + strand, within ABZR87_RS03965 at 826.989 kb on + strand, within ABZR87_RS03965 at 826.990 kb on - strand, within ABZR87_RS03965 at 827.181 kb on + strand, within ABZR87_RS03965 at 827.181 kb on + strand, within ABZR87_RS03965 at 827.181 kb on + strand, within ABZR87_RS03965 at 827.182 kb on - strand, within ABZR87_RS03965 at 827.328 kb on + strand, within ABZR87_RS03965 at 827.328 kb on + strand, within ABZR87_RS03965 at 827.329 kb on - strand, within ABZR87_RS03965 at 827.364 kb on + strand, within ABZR87_RS03965 at 827.364 kb on + strand, within ABZR87_RS03965 at 827.445 kb on + strand, within ABZR87_RS03965 at 827.446 kb on - strand, within ABZR87_RS03965 at 827.446 kb on - strand, within ABZR87_RS03965 at 827.446 kb on - strand, within ABZR87_RS03965 at 827.460 kb on + strand, within ABZR87_RS03965 at 827.460 kb on + strand, within ABZR87_RS03965 at 827.460 kb on + strand, within ABZR87_RS03965 at 827.508 kb on + strand, within ABZR87_RS03965 at 827.508 kb on + strand, within ABZR87_RS03965 at 827.508 kb on + strand, within ABZR87_RS03965 at 827.508 kb on + strand, within ABZR87_RS03965 at 827.508 kb on + strand, within ABZR87_RS03965 at 827.509 kb on - strand, within ABZR87_RS03965 at 827.509 kb on - strand, within ABZR87_RS03965 at 827.509 kb on - strand, within ABZR87_RS03965 at 827.509 kb on - strand, within ABZR87_RS03965 at 827.509 kb on - strand, within ABZR87_RS03965 at 827.509 kb on - strand, within ABZR87_RS03965 at 827.731 kb on - strand, within ABZR87_RS03965 at 827.731 kb on - strand, within ABZR87_RS03965 at 827.873 kb on + strand at 827.873 kb on + strand at 827.873 kb on + strand at 827.873 kb on + strand at 827.873 kb on + strand at 827.874 kb on - strand at 827.874 kb on - strand at 827.874 kb on - strand at 827.898 kb on - strand at 827.898 kb on - strand at 828.035 kb on + strand at 828.240 kb on + strand at 828.240 kb on + strand at 828.240 kb on + strand at 828.240 kb on + strand at 828.241 kb on - strand at 828.241 kb on - strand at 828.241 kb on - strand at 828.337 kb on - strand at 828.394 kb on + strand, within ABZR87_RS03970 at 828.394 kb on + strand, within ABZR87_RS03970 at 828.394 kb on + strand, within ABZR87_RS03970 at 828.394 kb on + strand, within ABZR87_RS03970 at 828.394 kb on + strand, within ABZR87_RS03970 at 828.395 kb on - strand, within ABZR87_RS03970 at 828.395 kb on - strand, within ABZR87_RS03970 at 828.395 kb on - strand, within ABZR87_RS03970 at 828.395 kb on - strand, within ABZR87_RS03970 at 828.395 kb on - strand, within ABZR87_RS03970 at 828.395 kb on - strand, within ABZR87_RS03970 at 828.652 kb on + strand, within ABZR87_RS03970 at 828.652 kb on + strand, within ABZR87_RS03970 at 828.652 kb on + strand, within ABZR87_RS03970 at 828.652 kb on + strand, within ABZR87_RS03970 at 828.652 kb on + strand, within ABZR87_RS03970 at 828.652 kb on + strand, within ABZR87_RS03970 at 828.653 kb on - strand, within ABZR87_RS03970 at 828.653 kb on - strand, within ABZR87_RS03970 at 828.653 kb on - strand, within ABZR87_RS03970 at 828.653 kb on - strand, within ABZR87_RS03970 at 828.748 kb on + strand, within ABZR87_RS03970 at 828.748 kb on + strand, within ABZR87_RS03970 at 828.748 kb on + strand, within ABZR87_RS03970 at 828.748 kb on + strand, within ABZR87_RS03970 at 828.748 kb on + strand, within ABZR87_RS03970 at 828.748 kb on + strand, within ABZR87_RS03970 at 828.749 kb on - strand, within ABZR87_RS03970 at 828.749 kb on - strand, within ABZR87_RS03970 at 828.749 kb on - strand, within ABZR87_RS03970 at 828.749 kb on - strand, within ABZR87_RS03970 at 828.749 kb on - strand, within ABZR87_RS03970 at 828.749 kb on - strand, within ABZR87_RS03970 at 828.749 kb on - strand, within ABZR87_RS03970 at 828.749 kb on - strand, within ABZR87_RS03970 at 828.749 kb on - strand, within ABZR87_RS03970 at 828.749 kb on - strand, within ABZR87_RS03970 at 828.800 kb on + strand, within ABZR87_RS03970 at 828.801 kb on - strand, within ABZR87_RS03970 at 828.816 kb on + strand, within ABZR87_RS03970 at 828.817 kb on - strand, within ABZR87_RS03970 at 828.817 kb on - strand, within ABZR87_RS03970 at 828.836 kb on + strand, within ABZR87_RS03970
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 2; outgrowth in LB remove 825,825 + ABZR87_RS03960 0.43 +0.3 825,852 + ABZR87_RS03960 0.46 +0.4 825,852 + ABZR87_RS03960 0.46 -0.0 825,852 + ABZR87_RS03960 0.46 +1.2 825,852 + ABZR87_RS03960 0.46 -2.1 825,853 - ABZR87_RS03960 0.46 +0.4 825,853 - ABZR87_RS03960 0.46 +1.4 825,853 - ABZR87_RS03960 0.46 -1.8 825,853 - ABZR87_RS03960 0.46 -0.1 825,853 - ABZR87_RS03960 0.46 +0.9 825,912 + ABZR87_RS03960 0.51 -0.0 825,913 - ABZR87_RS03960 0.51 -1.9 825,949 - ABZR87_RS03960 0.54 +1.6 825,955 + ABZR87_RS03960 0.54 -0.4 825,955 + ABZR87_RS03960 0.54 -0.2 825,996 + ABZR87_RS03960 0.57 -0.1 825,996 + ABZR87_RS03960 0.57 +1.3 825,996 + ABZR87_RS03960 0.57 -0.7 825,996 + ABZR87_RS03960 0.57 +0.4 825,996 + ABZR87_RS03960 0.57 +0.4 825,996 + ABZR87_RS03960 0.57 +1.1 825,996 + ABZR87_RS03960 0.57 +0.9 825,997 - ABZR87_RS03960 0.58 +0.6 825,997 - ABZR87_RS03960 0.58 -0.9 825,997 - ABZR87_RS03960 0.58 -0.8 826,369 - ABZR87_RS03960 0.88 +0.7 826,519 + -2.9 826,585 - -0.6 826,591 + -0.7 826,688 - -0.2 826,716 + -0.6 826,717 - +0.2 826,717 - +3.2 826,717 - +0.0 826,767 + -1.4 826,767 + +1.7 826,767 + -0.8 826,767 + +0.0 826,767 + -1.7 826,768 - +0.3 826,768 - -0.8 826,809 + +1.6 826,809 + +1.1 826,810 - -0.2 826,810 - +0.5 826,815 + -0.2 826,815 + -1.1 826,816 - -0.8 826,816 - -0.5 826,816 - +1.1 826,816 - -0.8 826,816 - -0.3 826,866 + ABZR87_RS03965 0.13 -0.4 826,866 + ABZR87_RS03965 0.13 -0.3 826,866 + ABZR87_RS03965 0.13 +2.1 826,867 - ABZR87_RS03965 0.13 -0.4 826,867 - ABZR87_RS03965 0.13 -1.7 826,867 - ABZR87_RS03965 0.13 +0.5 826,929 + ABZR87_RS03965 0.19 +0.2 826,929 + ABZR87_RS03965 0.19 +0.2 826,930 - ABZR87_RS03965 0.19 -0.8 826,930 - ABZR87_RS03965 0.19 -0.4 826,930 - ABZR87_RS03965 0.19 -0.4 826,936 - ABZR87_RS03965 0.19 -0.6 826,944 + ABZR87_RS03965 0.20 -0.8 826,944 + ABZR87_RS03965 0.20 -0.1 826,944 + ABZR87_RS03965 0.20 +1.0 826,944 + ABZR87_RS03965 0.20 +0.7 826,945 - ABZR87_RS03965 0.20 +0.7 826,977 + ABZR87_RS03965 0.23 +0.1 826,977 + ABZR87_RS03965 0.23 -2.4 826,977 + ABZR87_RS03965 0.23 +2.2 826,989 + ABZR87_RS03965 0.24 -0.2 826,989 + ABZR87_RS03965 0.24 -0.1 826,989 + ABZR87_RS03965 0.24 -1.4 826,989 + ABZR87_RS03965 0.24 +0.7 826,989 + ABZR87_RS03965 0.24 -0.0 826,989 + ABZR87_RS03965 0.24 +3.1 826,989 + ABZR87_RS03965 0.24 -1.0 826,989 + ABZR87_RS03965 0.24 -1.3 826,989 + ABZR87_RS03965 0.24 +1.1 826,990 - ABZR87_RS03965 0.24 +0.2 827,181 + ABZR87_RS03965 0.41 +0.5 827,181 + ABZR87_RS03965 0.41 +0.5 827,181 + ABZR87_RS03965 0.41 -0.0 827,182 - ABZR87_RS03965 0.41 -2.1 827,328 + ABZR87_RS03965 0.53 -0.2 827,328 + ABZR87_RS03965 0.53 -1.0 827,329 - ABZR87_RS03965 0.54 +0.2 827,364 + ABZR87_RS03965 0.57 -0.0 827,364 + ABZR87_RS03965 0.57 -1.5 827,445 + ABZR87_RS03965 0.64 +1.2 827,446 - ABZR87_RS03965 0.64 +0.5 827,446 - ABZR87_RS03965 0.64 -0.4 827,446 - ABZR87_RS03965 0.64 -0.9 827,460 + ABZR87_RS03965 0.65 +1.5 827,460 + ABZR87_RS03965 0.65 -0.9 827,460 + ABZR87_RS03965 0.65 -0.6 827,508 + ABZR87_RS03965 0.69 +1.0 827,508 + ABZR87_RS03965 0.69 +0.5 827,508 + ABZR87_RS03965 0.69 -0.0 827,508 + ABZR87_RS03965 0.69 +1.1 827,508 + ABZR87_RS03965 0.69 +0.9 827,509 - ABZR87_RS03965 0.69 +1.6 827,509 - ABZR87_RS03965 0.69 +0.3 827,509 - ABZR87_RS03965 0.69 -1.8 827,509 - ABZR87_RS03965 0.69 +0.1 827,509 - ABZR87_RS03965 0.69 -0.2 827,509 - ABZR87_RS03965 0.69 +0.4 827,731 - ABZR87_RS03965 0.89 +0.6 827,731 - ABZR87_RS03965 0.89 +1.5 827,873 + -2.1 827,873 + +0.2 827,873 + -1.5 827,873 + +0.3 827,873 + -0.1 827,874 - +1.5 827,874 - -0.1 827,874 - +1.4 827,898 - -4.2 827,898 - -0.1 828,035 + -3.2 828,240 + -2.0 828,240 + -3.8 828,240 + -2.0 828,240 + -2.6 828,241 - -4.0 828,241 - -0.5 828,241 - -1.2 828,337 - -3.2 828,394 + ABZR87_RS03970 0.10 -0.3 828,394 + ABZR87_RS03970 0.10 -2.6 828,394 + ABZR87_RS03970 0.10 -0.5 828,394 + ABZR87_RS03970 0.10 +0.1 828,394 + ABZR87_RS03970 0.10 -2.7 828,395 - ABZR87_RS03970 0.10 -0.8 828,395 - ABZR87_RS03970 0.10 -1.9 828,395 - ABZR87_RS03970 0.10 -2.9 828,395 - ABZR87_RS03970 0.10 -1.6 828,395 - ABZR87_RS03970 0.10 -1.2 828,395 - ABZR87_RS03970 0.10 -3.6 828,652 + ABZR87_RS03970 0.17 -1.2 828,652 + ABZR87_RS03970 0.17 -2.1 828,652 + ABZR87_RS03970 0.17 -3.6 828,652 + ABZR87_RS03970 0.17 +0.2 828,652 + ABZR87_RS03970 0.17 -1.1 828,652 + ABZR87_RS03970 0.17 -1.1 828,653 - ABZR87_RS03970 0.17 -1.9 828,653 - ABZR87_RS03970 0.17 -0.4 828,653 - ABZR87_RS03970 0.17 -1.4 828,653 - ABZR87_RS03970 0.17 -2.3 828,748 + ABZR87_RS03970 0.19 +0.2 828,748 + ABZR87_RS03970 0.19 -1.6 828,748 + ABZR87_RS03970 0.19 -1.1 828,748 + ABZR87_RS03970 0.19 -1.8 828,748 + ABZR87_RS03970 0.19 +0.1 828,748 + ABZR87_RS03970 0.19 -0.1 828,749 - ABZR87_RS03970 0.19 -2.0 828,749 - ABZR87_RS03970 0.19 -4.2 828,749 - ABZR87_RS03970 0.19 +0.2 828,749 - ABZR87_RS03970 0.19 -0.2 828,749 - ABZR87_RS03970 0.19 -1.6 828,749 - ABZR87_RS03970 0.19 -2.9 828,749 - ABZR87_RS03970 0.19 -3.2 828,749 - ABZR87_RS03970 0.19 -1.7 828,749 - ABZR87_RS03970 0.19 +0.4 828,749 - ABZR87_RS03970 0.19 -1.1 828,800 + ABZR87_RS03970 0.20 +0.4 828,801 - ABZR87_RS03970 0.20 -1.6 828,816 + ABZR87_RS03970 0.21 -0.9 828,817 - ABZR87_RS03970 0.21 -1.6 828,817 - ABZR87_RS03970 0.21 -1.7 828,836 + ABZR87_RS03970 0.21 -1.5
Or see this region's nucleotide sequence