Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03190

Experiment: soil EcoFAB sample 2; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS03180 and ABZR87_RS03185 are separated by 42 nucleotidesABZR87_RS03185 and ABZR87_RS03190 are separated by 272 nucleotidesABZR87_RS03190 and ABZR87_RS03195 are separated by 9 nucleotides ABZR87_RS03180: ABZR87_RS03180 - hypothetical protein, at 668,595 to 668,822 _RS03180 ABZR87_RS03185: ABZR87_RS03185 - hypothetical protein, at 668,865 to 669,074 _RS03185 ABZR87_RS03190: ABZR87_RS03190 - hypothetical protein, at 669,347 to 670,561 _RS03190 ABZR87_RS03195: ABZR87_RS03195 - cation diffusion facilitator family transporter, at 670,571 to 671,719 _RS03195 Position (kb) 669 670 671Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 668.364 kb on + strandat 668.364 kb on + strandat 668.364 kb on + strandat 668.364 kb on + strandat 668.364 kb on + strandat 668.365 kb on - strandat 668.365 kb on - strandat 668.365 kb on - strandat 668.365 kb on - strandat 668.365 kb on - strandat 668.365 kb on - strandat 668.365 kb on - strandat 668.365 kb on - strandat 668.365 kb on - strandat 668.415 kb on + strandat 668.415 kb on + strandat 668.415 kb on + strandat 668.415 kb on + strandat 668.415 kb on + strandat 668.415 kb on + strandat 668.416 kb on - strandat 668.416 kb on - strandat 668.426 kb on + strandat 668.426 kb on + strandat 668.480 kb on + strandat 668.480 kb on + strandat 668.481 kb on - strandat 668.518 kb on - strandat 668.583 kb on + strandat 668.596 kb on + strandat 668.596 kb on + strandat 668.596 kb on + strandat 668.596 kb on + strandat 668.597 kb on - strandat 668.597 kb on - strandat 668.597 kb on - strandat 668.674 kb on + strand, within ABZR87_RS03180at 668.675 kb on - strand, within ABZR87_RS03180at 668.675 kb on - strand, within ABZR87_RS03180at 668.815 kb on + strandat 668.815 kb on + strandat 668.866 kb on + strandat 668.866 kb on + strandat 668.867 kb on - strandat 668.867 kb on - strandat 668.924 kb on - strand, within ABZR87_RS03185at 669.020 kb on + strand, within ABZR87_RS03185at 669.021 kb on - strand, within ABZR87_RS03185at 669.021 kb on - strand, within ABZR87_RS03185at 669.024 kb on + strand, within ABZR87_RS03185at 669.025 kb on - strand, within ABZR87_RS03185at 669.025 kb on - strand, within ABZR87_RS03185at 669.025 kb on - strand, within ABZR87_RS03185at 669.025 kb on - strand, within ABZR87_RS03185at 669.025 kb on - strand, within ABZR87_RS03185at 669.338 kb on + strandat 669.338 kb on + strandat 669.338 kb on + strandat 669.339 kb on - strandat 669.339 kb on - strandat 669.339 kb on - strandat 669.339 kb on - strandat 669.339 kb on - strandat 669.339 kb on - strandat 669.339 kb on - strandat 669.339 kb on - strandat 669.342 kb on + strandat 669.342 kb on + strandat 669.342 kb on + strandat 669.343 kb on - strandat 669.343 kb on - strandat 669.343 kb on - strandat 669.391 kb on + strandat 669.464 kb on + strandat 669.464 kb on + strandat 669.464 kb on + strandat 669.465 kb on - strandat 669.465 kb on - strandat 669.584 kb on + strand, within ABZR87_RS03190at 669.584 kb on + strand, within ABZR87_RS03190at 669.584 kb on + strand, within ABZR87_RS03190at 669.584 kb on + strand, within ABZR87_RS03190at 669.585 kb on - strand, within ABZR87_RS03190at 669.585 kb on - strand, within ABZR87_RS03190at 669.585 kb on - strand, within ABZR87_RS03190at 669.585 kb on - strand, within ABZR87_RS03190at 669.585 kb on - strand, within ABZR87_RS03190at 669.585 kb on - strand, within ABZR87_RS03190at 669.585 kb on - strand, within ABZR87_RS03190at 669.585 kb on - strand, within ABZR87_RS03190at 669.585 kb on - strand, within ABZR87_RS03190at 669.758 kb on + strand, within ABZR87_RS03190at 669.758 kb on + strand, within ABZR87_RS03190at 669.758 kb on + strand, within ABZR87_RS03190at 669.758 kb on + strand, within ABZR87_RS03190at 669.759 kb on - strand, within ABZR87_RS03190at 669.759 kb on - strand, within ABZR87_RS03190at 669.759 kb on - strand, within ABZR87_RS03190at 669.826 kb on + strand, within ABZR87_RS03190at 669.827 kb on - strand, within ABZR87_RS03190at 669.827 kb on - strand, within ABZR87_RS03190at 669.827 kb on - strand, within ABZR87_RS03190at 669.827 kb on - strand, within ABZR87_RS03190at 669.861 kb on - strand, within ABZR87_RS03190at 669.861 kb on - strand, within ABZR87_RS03190at 669.861 kb on - strand, within ABZR87_RS03190at 669.861 kb on - strand, within ABZR87_RS03190at 669.921 kb on - strand, within ABZR87_RS03190at 669.932 kb on + strand, within ABZR87_RS03190at 669.933 kb on - strand, within ABZR87_RS03190at 669.933 kb on - strand, within ABZR87_RS03190at 670.142 kb on + strand, within ABZR87_RS03190at 670.142 kb on + strand, within ABZR87_RS03190at 670.142 kb on + strand, within ABZR87_RS03190at 670.142 kb on + strand, within ABZR87_RS03190at 670.142 kb on + strand, within ABZR87_RS03190at 670.145 kb on + strand, within ABZR87_RS03190at 670.145 kb on + strand, within ABZR87_RS03190at 670.145 kb on + strand, within ABZR87_RS03190at 670.145 kb on + strand, within ABZR87_RS03190at 670.146 kb on - strand, within ABZR87_RS03190at 670.146 kb on - strand, within ABZR87_RS03190at 670.146 kb on - strand, within ABZR87_RS03190at 670.146 kb on - strand, within ABZR87_RS03190at 670.146 kb on - strand, within ABZR87_RS03190at 670.146 kb on - strand, within ABZR87_RS03190at 670.146 kb on - strand, within ABZR87_RS03190at 670.146 kb on - strand, within ABZR87_RS03190at 670.146 kb on - strand, within ABZR87_RS03190at 670.146 kb on - strand, within ABZR87_RS03190at 670.146 kb on - strand, within ABZR87_RS03190at 670.146 kb on - strand, within ABZR87_RS03190at 670.151 kb on + strand, within ABZR87_RS03190at 670.151 kb on + strand, within ABZR87_RS03190at 670.151 kb on + strand, within ABZR87_RS03190at 670.151 kb on + strand, within ABZR87_RS03190at 670.151 kb on + strand, within ABZR87_RS03190at 670.152 kb on - strand, within ABZR87_RS03190at 670.152 kb on - strand, within ABZR87_RS03190at 670.152 kb on - strand, within ABZR87_RS03190at 670.152 kb on - strand, within ABZR87_RS03190at 670.152 kb on - strand, within ABZR87_RS03190at 670.152 kb on - strand, within ABZR87_RS03190at 670.152 kb on - strand, within ABZR87_RS03190at 670.185 kb on - strand, within ABZR87_RS03190at 670.261 kb on + strand, within ABZR87_RS03190at 670.261 kb on + strand, within ABZR87_RS03190at 670.261 kb on + strand, within ABZR87_RS03190at 670.261 kb on + strand, within ABZR87_RS03190at 670.262 kb on - strand, within ABZR87_RS03190at 670.262 kb on - strand, within ABZR87_RS03190at 670.319 kb on + strand, within ABZR87_RS03190at 670.319 kb on + strand, within ABZR87_RS03190at 670.320 kb on - strand, within ABZR87_RS03190at 670.320 kb on - strand, within ABZR87_RS03190at 670.320 kb on - strand, within ABZR87_RS03190at 670.322 kb on - strand, within ABZR87_RS03190at 670.322 kb on - strand, within ABZR87_RS03190at 670.322 kb on - strand, within ABZR87_RS03190at 670.322 kb on - strand, within ABZR87_RS03190at 670.399 kb on + strand, within ABZR87_RS03190at 670.399 kb on + strand, within ABZR87_RS03190at 670.400 kb on - strand, within ABZR87_RS03190at 670.704 kb on + strand, within ABZR87_RS03195at 670.704 kb on + strand, within ABZR87_RS03195at 670.704 kb on + strand, within ABZR87_RS03195at 670.704 kb on + strand, within ABZR87_RS03195at 670.704 kb on + strand, within ABZR87_RS03195at 670.704 kb on + strand, within ABZR87_RS03195at 670.704 kb on + strand, within ABZR87_RS03195at 670.704 kb on + strand, within ABZR87_RS03195at 670.704 kb on + strand, within ABZR87_RS03195at 670.704 kb on + strand, within ABZR87_RS03195at 670.705 kb on - strand, within ABZR87_RS03195at 670.705 kb on - strand, within ABZR87_RS03195at 670.705 kb on - strand, within ABZR87_RS03195at 670.705 kb on - strand, within ABZR87_RS03195at 670.705 kb on - strand, within ABZR87_RS03195at 670.705 kb on - strand, within ABZR87_RS03195at 670.864 kb on + strand, within ABZR87_RS03195at 670.864 kb on + strand, within ABZR87_RS03195at 670.864 kb on + strand, within ABZR87_RS03195at 670.864 kb on + strand, within ABZR87_RS03195at 670.864 kb on + strand, within ABZR87_RS03195at 670.864 kb on + strand, within ABZR87_RS03195at 670.864 kb on + strand, within ABZR87_RS03195at 670.865 kb on - strand, within ABZR87_RS03195at 670.865 kb on - strand, within ABZR87_RS03195at 670.865 kb on - strand, within ABZR87_RS03195at 670.946 kb on - strand, within ABZR87_RS03195at 671.166 kb on + strand, within ABZR87_RS03195at 671.166 kb on + strand, within ABZR87_RS03195at 671.167 kb on - strand, within ABZR87_RS03195at 671.167 kb on - strand, within ABZR87_RS03195at 671.167 kb on - strand, within ABZR87_RS03195at 671.167 kb on - strand, within ABZR87_RS03195at 671.289 kb on + strand, within ABZR87_RS03195at 671.289 kb on + strand, within ABZR87_RS03195at 671.290 kb on - strand, within ABZR87_RS03195at 671.290 kb on - strand, within ABZR87_RS03195at 671.290 kb on - strand, within ABZR87_RS03195at 671.290 kb on - strand, within ABZR87_RS03195at 671.290 kb on - strand, within ABZR87_RS03195at 671.476 kb on - strand, within ABZR87_RS03195at 671.476 kb on - strand, within ABZR87_RS03195at 671.476 kb on - strand, within ABZR87_RS03195at 671.557 kb on + strand, within ABZR87_RS03195at 671.557 kb on + strand, within ABZR87_RS03195at 671.557 kb on + strand, within ABZR87_RS03195at 671.557 kb on + strand, within ABZR87_RS03195at 671.557 kb on + strand, within ABZR87_RS03195at 671.557 kb on + strand, within ABZR87_RS03195at 671.557 kb on + strand, within ABZR87_RS03195at 671.557 kb on + strand, within ABZR87_RS03195at 671.558 kb on - strand, within ABZR87_RS03195at 671.558 kb on - strand, within ABZR87_RS03195at 671.558 kb on - strand, within ABZR87_RS03195at 671.558 kb on - strand, within ABZR87_RS03195at 671.558 kb on - strand, within ABZR87_RS03195at 671.558 kb on - strand, within ABZR87_RS03195at 671.558 kb on - strand, within ABZR87_RS03195at 671.558 kb on - strand, within ABZR87_RS03195

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 2; outgrowth in LB
remove
668,364 + -0.1
668,364 + +0.6
668,364 + +0.3
668,364 + +0.5
668,364 + -1.1
668,365 - -1.4
668,365 - -3.5
668,365 - -0.5
668,365 - -0.1
668,365 - -1.6
668,365 - +0.4
668,365 - -1.1
668,365 - +0.6
668,365 - -1.2
668,415 + -0.0
668,415 + -0.7
668,415 + -1.5
668,415 + -1.1
668,415 + +0.4
668,415 + +0.9
668,416 - +0.2
668,416 - +0.9
668,426 + -0.3
668,426 + -1.4
668,480 + -0.5
668,480 + +0.7
668,481 - +1.3
668,518 - -0.9
668,583 + -1.0
668,596 + +0.3
668,596 + -0.6
668,596 + +0.1
668,596 + +0.7
668,597 - -2.2
668,597 - +0.7
668,597 - -1.1
668,674 + ABZR87_RS03180 0.35 +1.4
668,675 - ABZR87_RS03180 0.35 +0.5
668,675 - ABZR87_RS03180 0.35 -1.3
668,815 + -1.1
668,815 + -1.8
668,866 + -0.0
668,866 + +0.2
668,867 - +1.2
668,867 - +0.3
668,924 - ABZR87_RS03185 0.28 +0.3
669,020 + ABZR87_RS03185 0.74 -1.2
669,021 - ABZR87_RS03185 0.74 -0.2
669,021 - ABZR87_RS03185 0.74 -1.0
669,024 + ABZR87_RS03185 0.76 -0.3
669,025 - ABZR87_RS03185 0.76 -1.4
669,025 - ABZR87_RS03185 0.76 -0.7
669,025 - ABZR87_RS03185 0.76 -1.7
669,025 - ABZR87_RS03185 0.76 -0.6
669,025 - ABZR87_RS03185 0.76 -0.3
669,338 + +0.6
669,338 + +0.3
669,338 + +0.1
669,339 - -0.4
669,339 - -2.6
669,339 - -0.3
669,339 - +0.2
669,339 - +0.3
669,339 - -1.9
669,339 - -0.3
669,339 - +0.3
669,342 + -0.0
669,342 + -0.7
669,342 + +0.0
669,343 - -1.6
669,343 - +0.7
669,343 - +0.1
669,391 + +1.0
669,464 + +0.7
669,464 + +0.3
669,464 + -0.7
669,465 - -1.3
669,465 - -0.1
669,584 + ABZR87_RS03190 0.20 +1.1
669,584 + ABZR87_RS03190 0.20 -2.5
669,584 + ABZR87_RS03190 0.20 -1.4
669,584 + ABZR87_RS03190 0.20 +0.8
669,585 - ABZR87_RS03190 0.20 -0.3
669,585 - ABZR87_RS03190 0.20 +1.4
669,585 - ABZR87_RS03190 0.20 -2.1
669,585 - ABZR87_RS03190 0.20 -1.5
669,585 - ABZR87_RS03190 0.20 +0.1
669,585 - ABZR87_RS03190 0.20 -0.7
669,585 - ABZR87_RS03190 0.20 -0.5
669,585 - ABZR87_RS03190 0.20 -0.1
669,585 - ABZR87_RS03190 0.20 +0.7
669,758 + ABZR87_RS03190 0.34 -0.4
669,758 + ABZR87_RS03190 0.34 +0.8
669,758 + ABZR87_RS03190 0.34 +0.1
669,758 + ABZR87_RS03190 0.34 -1.6
669,759 - ABZR87_RS03190 0.34 -3.5
669,759 - ABZR87_RS03190 0.34 -0.6
669,759 - ABZR87_RS03190 0.34 -1.2
669,826 + ABZR87_RS03190 0.39 -0.5
669,827 - ABZR87_RS03190 0.40 -0.4
669,827 - ABZR87_RS03190 0.40 -0.4
669,827 - ABZR87_RS03190 0.40 +0.2
669,827 - ABZR87_RS03190 0.40 -0.6
669,861 - ABZR87_RS03190 0.42 +0.5
669,861 - ABZR87_RS03190 0.42 -0.1
669,861 - ABZR87_RS03190 0.42 -2.6
669,861 - ABZR87_RS03190 0.42 -1.2
669,921 - ABZR87_RS03190 0.47 +0.9
669,932 + ABZR87_RS03190 0.48 +1.0
669,933 - ABZR87_RS03190 0.48 -1.2
669,933 - ABZR87_RS03190 0.48 +0.3
670,142 + ABZR87_RS03190 0.65 -2.6
670,142 + ABZR87_RS03190 0.65 -1.4
670,142 + ABZR87_RS03190 0.65 -0.8
670,142 + ABZR87_RS03190 0.65 -3.9
670,142 + ABZR87_RS03190 0.65 -3.7
670,145 + ABZR87_RS03190 0.66 -1.1
670,145 + ABZR87_RS03190 0.66 +1.3
670,145 + ABZR87_RS03190 0.66 +0.2
670,145 + ABZR87_RS03190 0.66 +0.1
670,146 - ABZR87_RS03190 0.66 +0.9
670,146 - ABZR87_RS03190 0.66 +0.3
670,146 - ABZR87_RS03190 0.66 -0.3
670,146 - ABZR87_RS03190 0.66 -0.3
670,146 - ABZR87_RS03190 0.66 -2.2
670,146 - ABZR87_RS03190 0.66 -1.0
670,146 - ABZR87_RS03190 0.66 +0.5
670,146 - ABZR87_RS03190 0.66 -0.1
670,146 - ABZR87_RS03190 0.66 -0.1
670,146 - ABZR87_RS03190 0.66 -0.2
670,146 - ABZR87_RS03190 0.66 +1.7
670,146 - ABZR87_RS03190 0.66 +0.3
670,151 + ABZR87_RS03190 0.66 +1.8
670,151 + ABZR87_RS03190 0.66 +0.8
670,151 + ABZR87_RS03190 0.66 -0.3
670,151 + ABZR87_RS03190 0.66 +0.8
670,151 + ABZR87_RS03190 0.66 +1.0
670,152 - ABZR87_RS03190 0.66 -1.5
670,152 - ABZR87_RS03190 0.66 -0.5
670,152 - ABZR87_RS03190 0.66 -1.4
670,152 - ABZR87_RS03190 0.66 +0.3
670,152 - ABZR87_RS03190 0.66 -0.2
670,152 - ABZR87_RS03190 0.66 -0.7
670,152 - ABZR87_RS03190 0.66 +1.5
670,185 - ABZR87_RS03190 0.69 -0.6
670,261 + ABZR87_RS03190 0.75 +0.6
670,261 + ABZR87_RS03190 0.75 +0.9
670,261 + ABZR87_RS03190 0.75 +0.5
670,261 + ABZR87_RS03190 0.75 -0.1
670,262 - ABZR87_RS03190 0.75 +0.5
670,262 - ABZR87_RS03190 0.75 -0.3
670,319 + ABZR87_RS03190 0.80 +0.6
670,319 + ABZR87_RS03190 0.80 -0.8
670,320 - ABZR87_RS03190 0.80 -0.7
670,320 - ABZR87_RS03190 0.80 +1.3
670,320 - ABZR87_RS03190 0.80 -0.4
670,322 - ABZR87_RS03190 0.80 -0.4
670,322 - ABZR87_RS03190 0.80 -0.2
670,322 - ABZR87_RS03190 0.80 -1.5
670,322 - ABZR87_RS03190 0.80 +0.1
670,399 + ABZR87_RS03190 0.87 +1.0
670,399 + ABZR87_RS03190 0.87 -0.2
670,400 - ABZR87_RS03190 0.87 -1.0
670,704 + ABZR87_RS03195 0.12 +0.5
670,704 + ABZR87_RS03195 0.12 -0.4
670,704 + ABZR87_RS03195 0.12 -1.9
670,704 + ABZR87_RS03195 0.12 -0.8
670,704 + ABZR87_RS03195 0.12 +0.4
670,704 + ABZR87_RS03195 0.12 -0.9
670,704 + ABZR87_RS03195 0.12 +1.1
670,704 + ABZR87_RS03195 0.12 -0.1
670,704 + ABZR87_RS03195 0.12 -2.2
670,704 + ABZR87_RS03195 0.12 -3.0
670,705 - ABZR87_RS03195 0.12 -1.2
670,705 - ABZR87_RS03195 0.12 -0.7
670,705 - ABZR87_RS03195 0.12 +0.2
670,705 - ABZR87_RS03195 0.12 +0.0
670,705 - ABZR87_RS03195 0.12 -0.9
670,705 - ABZR87_RS03195 0.12 -0.6
670,864 + ABZR87_RS03195 0.26 +0.8
670,864 + ABZR87_RS03195 0.26 +0.2
670,864 + ABZR87_RS03195 0.26 -0.1
670,864 + ABZR87_RS03195 0.26 -1.4
670,864 + ABZR87_RS03195 0.26 -2.3
670,864 + ABZR87_RS03195 0.26 -1.0
670,864 + ABZR87_RS03195 0.26 +0.7
670,865 - ABZR87_RS03195 0.26 -0.4
670,865 - ABZR87_RS03195 0.26 -0.0
670,865 - ABZR87_RS03195 0.26 -0.0
670,946 - ABZR87_RS03195 0.33 +0.1
671,166 + ABZR87_RS03195 0.52 -1.3
671,166 + ABZR87_RS03195 0.52 -0.4
671,167 - ABZR87_RS03195 0.52 +0.7
671,167 - ABZR87_RS03195 0.52 -1.9
671,167 - ABZR87_RS03195 0.52 +0.3
671,167 - ABZR87_RS03195 0.52 -0.7
671,289 + ABZR87_RS03195 0.62 -2.8
671,289 + ABZR87_RS03195 0.62 -1.2
671,290 - ABZR87_RS03195 0.63 -1.6
671,290 - ABZR87_RS03195 0.63 +1.1
671,290 - ABZR87_RS03195 0.63 +0.2
671,290 - ABZR87_RS03195 0.63 -0.2
671,290 - ABZR87_RS03195 0.63 +0.1
671,476 - ABZR87_RS03195 0.79 -0.8
671,476 - ABZR87_RS03195 0.79 -0.6
671,476 - ABZR87_RS03195 0.79 -1.5
671,557 + ABZR87_RS03195 0.86 -0.7
671,557 + ABZR87_RS03195 0.86 +1.3
671,557 + ABZR87_RS03195 0.86 +0.8
671,557 + ABZR87_RS03195 0.86 +1.0
671,557 + ABZR87_RS03195 0.86 -0.4
671,557 + ABZR87_RS03195 0.86 +0.6
671,557 + ABZR87_RS03195 0.86 +0.4
671,557 + ABZR87_RS03195 0.86 -0.6
671,558 - ABZR87_RS03195 0.86 -3.0
671,558 - ABZR87_RS03195 0.86 -2.0
671,558 - ABZR87_RS03195 0.86 -2.9
671,558 - ABZR87_RS03195 0.86 -2.5
671,558 - ABZR87_RS03195 0.86 -1.5
671,558 - ABZR87_RS03195 0.86 -0.3
671,558 - ABZR87_RS03195 0.86 -1.3
671,558 - ABZR87_RS03195 0.86 -1.3

Or see this region's nucleotide sequence