Experiment: soil EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03105 and ABZR87_RS03110 are separated by 12 nucleotides ABZR87_RS03110 and ABZR87_RS03115 are separated by 117 nucleotides
ABZR87_RS03105: ABZR87_RS03105 - MipA/OmpV family protein, at 653,701 to 654,498
_RS03105
ABZR87_RS03110: ABZR87_RS03110 - alpha/beta fold hydrolase, at 654,511 to 655,431
_RS03110
ABZR87_RS03115: ABZR87_RS03115 - helix-turn-helix transcriptional regulator, at 655,549 to 656,511
_RS03115
Position (kb) 654
655
656 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 653.547 kb on + strand at 653.547 kb on + strand at 653.548 kb on - strand at 653.548 kb on - strand at 653.698 kb on + strand at 653.698 kb on + strand at 653.698 kb on + strand at 653.698 kb on + strand at 653.698 kb on + strand at 653.698 kb on + strand at 653.698 kb on + strand at 653.698 kb on + strand at 653.699 kb on - strand at 653.699 kb on - strand at 653.699 kb on - strand at 653.699 kb on - strand at 653.699 kb on - strand at 653.699 kb on - strand at 653.699 kb on - strand at 653.737 kb on + strand at 653.737 kb on + strand at 653.738 kb on - strand at 653.738 kb on - strand at 653.738 kb on - strand at 653.782 kb on + strand, within ABZR87_RS03105 at 653.782 kb on + strand, within ABZR87_RS03105 at 653.782 kb on + strand, within ABZR87_RS03105 at 653.782 kb on + strand, within ABZR87_RS03105 at 653.783 kb on - strand, within ABZR87_RS03105 at 653.783 kb on - strand, within ABZR87_RS03105 at 653.783 kb on - strand, within ABZR87_RS03105 at 653.783 kb on - strand, within ABZR87_RS03105 at 653.800 kb on + strand, within ABZR87_RS03105 at 653.801 kb on - strand, within ABZR87_RS03105 at 653.801 kb on - strand, within ABZR87_RS03105 at 653.854 kb on + strand, within ABZR87_RS03105 at 653.854 kb on + strand, within ABZR87_RS03105 at 653.854 kb on + strand, within ABZR87_RS03105 at 653.854 kb on + strand, within ABZR87_RS03105 at 653.854 kb on + strand, within ABZR87_RS03105 at 653.936 kb on - strand, within ABZR87_RS03105 at 653.936 kb on - strand, within ABZR87_RS03105 at 653.983 kb on + strand, within ABZR87_RS03105 at 653.983 kb on + strand, within ABZR87_RS03105 at 653.984 kb on - strand, within ABZR87_RS03105 at 653.984 kb on - strand, within ABZR87_RS03105 at 654.013 kb on + strand, within ABZR87_RS03105 at 654.253 kb on + strand, within ABZR87_RS03105 at 654.253 kb on + strand, within ABZR87_RS03105 at 654.253 kb on + strand, within ABZR87_RS03105 at 654.253 kb on + strand, within ABZR87_RS03105 at 654.253 kb on + strand, within ABZR87_RS03105 at 654.253 kb on + strand, within ABZR87_RS03105 at 654.253 kb on + strand, within ABZR87_RS03105 at 654.253 kb on + strand, within ABZR87_RS03105 at 654.253 kb on + strand, within ABZR87_RS03105 at 654.253 kb on + strand, within ABZR87_RS03105 at 654.254 kb on - strand, within ABZR87_RS03105 at 654.254 kb on - strand, within ABZR87_RS03105 at 654.254 kb on - strand, within ABZR87_RS03105 at 654.265 kb on + strand, within ABZR87_RS03105 at 654.265 kb on + strand, within ABZR87_RS03105 at 654.266 kb on - strand, within ABZR87_RS03105 at 654.266 kb on - strand, within ABZR87_RS03105 at 654.266 kb on - strand, within ABZR87_RS03105 at 654.266 kb on - strand, within ABZR87_RS03105 at 654.313 kb on + strand, within ABZR87_RS03105 at 654.314 kb on - strand, within ABZR87_RS03105 at 654.366 kb on + strand, within ABZR87_RS03105 at 654.366 kb on + strand, within ABZR87_RS03105 at 654.366 kb on + strand, within ABZR87_RS03105 at 654.366 kb on + strand, within ABZR87_RS03105 at 654.366 kb on + strand, within ABZR87_RS03105 at 654.367 kb on - strand, within ABZR87_RS03105 at 654.367 kb on - strand, within ABZR87_RS03105 at 654.367 kb on - strand, within ABZR87_RS03105 at 654.367 kb on - strand, within ABZR87_RS03105 at 654.367 kb on - strand, within ABZR87_RS03105 at 654.367 kb on - strand, within ABZR87_RS03105 at 654.367 kb on - strand, within ABZR87_RS03105 at 654.463 kb on + strand at 654.463 kb on + strand at 654.463 kb on + strand at 654.463 kb on + strand at 654.463 kb on + strand at 654.463 kb on + strand at 654.464 kb on - strand at 654.464 kb on - strand at 654.464 kb on - strand at 654.464 kb on - strand at 654.464 kb on - strand at 654.464 kb on - strand at 654.487 kb on + strand at 654.488 kb on - strand at 654.488 kb on - strand at 654.488 kb on - strand at 654.753 kb on + strand, within ABZR87_RS03110 at 654.754 kb on - strand, within ABZR87_RS03110 at 654.783 kb on - strand, within ABZR87_RS03110 at 654.783 kb on - strand, within ABZR87_RS03110 at 655.142 kb on + strand, within ABZR87_RS03110 at 655.208 kb on + strand, within ABZR87_RS03110 at 655.208 kb on + strand, within ABZR87_RS03110 at 655.265 kb on + strand, within ABZR87_RS03110 at 655.266 kb on - strand, within ABZR87_RS03110 at 655.266 kb on - strand, within ABZR87_RS03110 at 655.472 kb on - strand at 655.499 kb on + strand at 655.499 kb on + strand at 655.499 kb on + strand at 655.500 kb on - strand at 655.510 kb on + strand at 655.510 kb on + strand at 655.511 kb on - strand at 655.511 kb on - strand at 655.524 kb on - strand at 655.524 kb on - strand at 655.524 kb on - strand at 655.541 kb on + strand at 655.541 kb on + strand at 655.541 kb on + strand at 655.541 kb on + strand at 655.541 kb on + strand at 655.541 kb on + strand at 655.542 kb on - strand at 655.542 kb on - strand at 655.542 kb on - strand at 655.542 kb on - strand at 655.720 kb on + strand, within ABZR87_RS03115 at 655.721 kb on - strand, within ABZR87_RS03115 at 655.721 kb on - strand, within ABZR87_RS03115 at 655.722 kb on + strand, within ABZR87_RS03115 at 655.722 kb on + strand, within ABZR87_RS03115 at 655.722 kb on + strand, within ABZR87_RS03115 at 655.722 kb on + strand, within ABZR87_RS03115 at 655.723 kb on - strand, within ABZR87_RS03115 at 655.723 kb on - strand, within ABZR87_RS03115 at 655.723 kb on - strand, within ABZR87_RS03115 at 655.723 kb on - strand, within ABZR87_RS03115 at 655.894 kb on + strand, within ABZR87_RS03115 at 655.895 kb on - strand, within ABZR87_RS03115 at 655.993 kb on + strand, within ABZR87_RS03115 at 656.127 kb on - strand, within ABZR87_RS03115 at 656.182 kb on + strand, within ABZR87_RS03115 at 656.182 kb on + strand, within ABZR87_RS03115 at 656.182 kb on + strand, within ABZR87_RS03115 at 656.182 kb on + strand, within ABZR87_RS03115 at 656.183 kb on - strand, within ABZR87_RS03115 at 656.183 kb on - strand, within ABZR87_RS03115 at 656.183 kb on - strand, within ABZR87_RS03115 at 656.313 kb on + strand, within ABZR87_RS03115 at 656.313 kb on + strand, within ABZR87_RS03115 at 656.314 kb on - strand, within ABZR87_RS03115 at 656.314 kb on - strand, within ABZR87_RS03115
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 2; outgrowth in LB remove 653,547 + -0.5 653,547 + -0.6 653,548 - -0.6 653,548 - -0.1 653,698 + +0.5 653,698 + -0.9 653,698 + -0.6 653,698 + +0.1 653,698 + +1.6 653,698 + +0.8 653,698 + -0.8 653,698 + -0.5 653,699 - +0.4 653,699 - +1.7 653,699 - -0.1 653,699 - -1.3 653,699 - +0.1 653,699 - -1.3 653,699 - -2.2 653,737 + +1.2 653,737 + +0.9 653,738 - +0.5 653,738 - -0.4 653,738 - +1.3 653,782 + ABZR87_RS03105 0.10 +0.5 653,782 + ABZR87_RS03105 0.10 -1.2 653,782 + ABZR87_RS03105 0.10 +1.2 653,782 + ABZR87_RS03105 0.10 -0.9 653,783 - ABZR87_RS03105 0.10 +0.2 653,783 - ABZR87_RS03105 0.10 +0.1 653,783 - ABZR87_RS03105 0.10 +0.4 653,783 - ABZR87_RS03105 0.10 -0.3 653,800 + ABZR87_RS03105 0.12 +0.6 653,801 - ABZR87_RS03105 0.13 +0.4 653,801 - ABZR87_RS03105 0.13 -0.3 653,854 + ABZR87_RS03105 0.19 -0.3 653,854 + ABZR87_RS03105 0.19 -0.6 653,854 + ABZR87_RS03105 0.19 -0.0 653,854 + ABZR87_RS03105 0.19 +0.2 653,854 + ABZR87_RS03105 0.19 -0.1 653,936 - ABZR87_RS03105 0.29 +0.3 653,936 - ABZR87_RS03105 0.29 +0.6 653,983 + ABZR87_RS03105 0.35 -1.1 653,983 + ABZR87_RS03105 0.35 +0.7 653,984 - ABZR87_RS03105 0.35 -2.7 653,984 - ABZR87_RS03105 0.35 -2.9 654,013 + ABZR87_RS03105 0.39 +1.1 654,253 + ABZR87_RS03105 0.69 -0.4 654,253 + ABZR87_RS03105 0.69 -1.5 654,253 + ABZR87_RS03105 0.69 -0.9 654,253 + ABZR87_RS03105 0.69 -0.3 654,253 + ABZR87_RS03105 0.69 -1.4 654,253 + ABZR87_RS03105 0.69 -0.2 654,253 + ABZR87_RS03105 0.69 +1.2 654,253 + ABZR87_RS03105 0.69 -0.2 654,253 + ABZR87_RS03105 0.69 +0.8 654,253 + ABZR87_RS03105 0.69 -0.3 654,254 - ABZR87_RS03105 0.69 +1.8 654,254 - ABZR87_RS03105 0.69 +0.4 654,254 - ABZR87_RS03105 0.69 -0.1 654,265 + ABZR87_RS03105 0.71 -1.1 654,265 + ABZR87_RS03105 0.71 -1.1 654,266 - ABZR87_RS03105 0.71 -0.7 654,266 - ABZR87_RS03105 0.71 -2.8 654,266 - ABZR87_RS03105 0.71 -1.0 654,266 - ABZR87_RS03105 0.71 -0.6 654,313 + ABZR87_RS03105 0.77 +0.7 654,314 - ABZR87_RS03105 0.77 -0.7 654,366 + ABZR87_RS03105 0.83 +0.5 654,366 + ABZR87_RS03105 0.83 +0.9 654,366 + ABZR87_RS03105 0.83 -1.5 654,366 + ABZR87_RS03105 0.83 +0.4 654,366 + ABZR87_RS03105 0.83 -1.1 654,367 - ABZR87_RS03105 0.83 -1.1 654,367 - ABZR87_RS03105 0.83 +2.0 654,367 - ABZR87_RS03105 0.83 -1.6 654,367 - ABZR87_RS03105 0.83 +0.3 654,367 - ABZR87_RS03105 0.83 -2.0 654,367 - ABZR87_RS03105 0.83 +0.0 654,367 - ABZR87_RS03105 0.83 -0.3 654,463 + +1.1 654,463 + +0.7 654,463 + -0.8 654,463 + -1.8 654,463 + -1.9 654,463 + +0.6 654,464 - -1.1 654,464 - -0.2 654,464 - -3.3 654,464 - -0.5 654,464 - +0.8 654,464 - -0.6 654,487 + +0.7 654,488 - -3.4 654,488 - -1.6 654,488 - +0.2 654,753 + ABZR87_RS03110 0.26 +0.0 654,754 - ABZR87_RS03110 0.26 -0.6 654,783 - ABZR87_RS03110 0.30 -2.8 654,783 - ABZR87_RS03110 0.30 -1.8 655,142 + ABZR87_RS03110 0.69 -3.8 655,208 + ABZR87_RS03110 0.76 +0.3 655,208 + ABZR87_RS03110 0.76 -0.5 655,265 + ABZR87_RS03110 0.82 -0.3 655,266 - ABZR87_RS03110 0.82 -0.6 655,266 - ABZR87_RS03110 0.82 +1.5 655,472 - -0.3 655,499 + -0.1 655,499 + -0.1 655,499 + +1.2 655,500 - -0.3 655,510 + +1.5 655,510 + -3.2 655,511 - +1.4 655,511 - -0.2 655,524 - +0.3 655,524 - +0.2 655,524 - +1.7 655,541 + -0.8 655,541 + +0.7 655,541 + -3.5 655,541 + +0.2 655,541 + -0.2 655,541 + +0.6 655,542 - -1.4 655,542 - -1.7 655,542 - -1.2 655,542 - +0.1 655,720 + ABZR87_RS03115 0.18 -0.3 655,721 - ABZR87_RS03115 0.18 +0.4 655,721 - ABZR87_RS03115 0.18 -2.1 655,722 + ABZR87_RS03115 0.18 +0.8 655,722 + ABZR87_RS03115 0.18 -0.4 655,722 + ABZR87_RS03115 0.18 +0.8 655,722 + ABZR87_RS03115 0.18 +1.1 655,723 - ABZR87_RS03115 0.18 +0.6 655,723 - ABZR87_RS03115 0.18 -0.4 655,723 - ABZR87_RS03115 0.18 +0.8 655,723 - ABZR87_RS03115 0.18 +0.6 655,894 + ABZR87_RS03115 0.36 +0.0 655,895 - ABZR87_RS03115 0.36 -0.2 655,993 + ABZR87_RS03115 0.46 +0.7 656,127 - ABZR87_RS03115 0.60 -0.3 656,182 + ABZR87_RS03115 0.66 -0.9 656,182 + ABZR87_RS03115 0.66 -0.4 656,182 + ABZR87_RS03115 0.66 -0.9 656,182 + ABZR87_RS03115 0.66 +0.5 656,183 - ABZR87_RS03115 0.66 -0.1 656,183 - ABZR87_RS03115 0.66 -1.6 656,183 - ABZR87_RS03115 0.66 -0.4 656,313 + ABZR87_RS03115 0.79 -0.0 656,313 + ABZR87_RS03115 0.79 +1.0 656,314 - ABZR87_RS03115 0.79 -0.5 656,314 - ABZR87_RS03115 0.79 +0.9
Or see this region's nucleotide sequence