Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02595

Experiment: soil EcoFAB sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02590 and ABZR87_RS02595 overlap by 4 nucleotidesABZR87_RS02595 and ABZR87_RS02600 are separated by 138 nucleotides ABZR87_RS02590: ABZR87_RS02590 - 3-dehydroquinate synthase, at 550,794 to 551,900 _RS02590 ABZR87_RS02595: ABZR87_RS02595 - shikimate kinase, at 551,897 to 552,469 _RS02595 ABZR87_RS02600: ABZR87_RS02600 - temperature dependent type IV pilus secretin PilQ, at 552,608 to 554,764 _RS02600 Position (kb) 551 552 553Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 550.905 kb on + strand, within ABZR87_RS02590at 550.905 kb on + strand, within ABZR87_RS02590at 550.905 kb on + strand, within ABZR87_RS02590at 550.906 kb on - strand, within ABZR87_RS02590at 550.906 kb on - strand, within ABZR87_RS02590at 550.906 kb on - strand, within ABZR87_RS02590at 551.228 kb on + strand, within ABZR87_RS02590at 551.228 kb on + strand, within ABZR87_RS02590at 551.228 kb on + strand, within ABZR87_RS02590at 551.228 kb on + strand, within ABZR87_RS02590at 551.229 kb on - strand, within ABZR87_RS02590at 551.314 kb on + strand, within ABZR87_RS02590at 551.315 kb on - strand, within ABZR87_RS02590at 551.315 kb on - strand, within ABZR87_RS02590at 551.396 kb on + strand, within ABZR87_RS02590at 551.396 kb on + strand, within ABZR87_RS02590at 551.397 kb on - strand, within ABZR87_RS02590at 551.397 kb on - strand, within ABZR87_RS02590at 551.548 kb on + strand, within ABZR87_RS02590at 551.548 kb on + strand, within ABZR87_RS02590at 551.548 kb on + strand, within ABZR87_RS02590at 551.548 kb on + strand, within ABZR87_RS02590at 551.548 kb on + strand, within ABZR87_RS02590at 551.548 kb on + strand, within ABZR87_RS02590at 551.549 kb on - strand, within ABZR87_RS02590at 551.549 kb on - strand, within ABZR87_RS02590at 551.549 kb on - strand, within ABZR87_RS02590at 551.549 kb on - strand, within ABZR87_RS02590at 551.549 kb on - strand, within ABZR87_RS02590at 551.755 kb on + strand, within ABZR87_RS02590at 551.755 kb on + strand, within ABZR87_RS02590at 551.755 kb on + strand, within ABZR87_RS02590at 551.755 kb on + strand, within ABZR87_RS02590at 551.755 kb on + strand, within ABZR87_RS02590at 551.755 kb on + strand, within ABZR87_RS02590at 551.755 kb on + strand, within ABZR87_RS02590at 551.756 kb on - strand, within ABZR87_RS02590at 551.756 kb on - strand, within ABZR87_RS02590at 551.756 kb on - strand, within ABZR87_RS02590at 551.756 kb on - strand, within ABZR87_RS02590at 551.756 kb on - strand, within ABZR87_RS02590at 551.756 kb on - strand, within ABZR87_RS02590at 551.756 kb on - strand, within ABZR87_RS02590at 551.852 kb on + strandat 551.894 kb on + strandat 551.894 kb on + strandat 551.894 kb on + strandat 551.895 kb on - strandat 551.895 kb on - strandat 551.895 kb on - strandat 551.983 kb on + strand, within ABZR87_RS02595at 551.983 kb on + strand, within ABZR87_RS02595at 551.983 kb on + strand, within ABZR87_RS02595at 551.984 kb on - strand, within ABZR87_RS02595at 551.984 kb on - strand, within ABZR87_RS02595at 551.984 kb on - strand, within ABZR87_RS02595at 551.984 kb on - strand, within ABZR87_RS02595at 551.986 kb on + strand, within ABZR87_RS02595at 551.986 kb on + strand, within ABZR87_RS02595at 551.986 kb on + strand, within ABZR87_RS02595at 551.986 kb on + strand, within ABZR87_RS02595at 551.986 kb on + strand, within ABZR87_RS02595at 551.986 kb on + strand, within ABZR87_RS02595at 551.987 kb on - strand, within ABZR87_RS02595at 551.987 kb on - strand, within ABZR87_RS02595at 551.987 kb on - strand, within ABZR87_RS02595at 551.987 kb on - strand, within ABZR87_RS02595at 551.987 kb on - strand, within ABZR87_RS02595at 551.987 kb on - strand, within ABZR87_RS02595at 552.045 kb on + strand, within ABZR87_RS02595at 552.045 kb on + strand, within ABZR87_RS02595at 552.045 kb on + strand, within ABZR87_RS02595at 552.142 kb on - strand, within ABZR87_RS02595at 552.142 kb on - strand, within ABZR87_RS02595at 552.142 kb on - strand, within ABZR87_RS02595at 552.142 kb on - strand, within ABZR87_RS02595at 552.142 kb on - strand, within ABZR87_RS02595at 552.168 kb on + strand, within ABZR87_RS02595at 552.168 kb on + strand, within ABZR87_RS02595at 552.168 kb on + strand, within ABZR87_RS02595at 552.168 kb on + strand, within ABZR87_RS02595at 552.168 kb on + strand, within ABZR87_RS02595at 552.169 kb on - strand, within ABZR87_RS02595at 552.503 kb on + strandat 552.503 kb on + strandat 552.504 kb on - strandat 552.504 kb on - strandat 552.768 kb on + strandat 552.768 kb on + strandat 552.768 kb on + strandat 552.769 kb on - strandat 552.769 kb on - strandat 552.769 kb on - strandat 552.772 kb on + strandat 552.773 kb on - strandat 552.773 kb on - strandat 552.862 kb on + strand, within ABZR87_RS02600at 552.863 kb on - strand, within ABZR87_RS02600at 552.866 kb on + strand, within ABZR87_RS02600at 552.866 kb on + strand, within ABZR87_RS02600at 552.866 kb on + strand, within ABZR87_RS02600at 552.866 kb on + strand, within ABZR87_RS02600at 552.866 kb on + strand, within ABZR87_RS02600at 552.866 kb on + strand, within ABZR87_RS02600at 552.866 kb on + strand, within ABZR87_RS02600at 552.866 kb on + strand, within ABZR87_RS02600at 552.866 kb on + strand, within ABZR87_RS02600at 552.866 kb on + strand, within ABZR87_RS02600at 552.867 kb on - strand, within ABZR87_RS02600at 552.867 kb on - strand, within ABZR87_RS02600at 552.867 kb on - strand, within ABZR87_RS02600at 552.867 kb on - strand, within ABZR87_RS02600at 552.867 kb on - strand, within ABZR87_RS02600at 552.867 kb on - strand, within ABZR87_RS02600at 552.867 kb on - strand, within ABZR87_RS02600at 552.867 kb on - strand, within ABZR87_RS02600at 552.867 kb on - strand, within ABZR87_RS02600at 552.996 kb on + strand, within ABZR87_RS02600at 553.009 kb on + strand, within ABZR87_RS02600at 553.010 kb on - strand, within ABZR87_RS02600at 553.010 kb on - strand, within ABZR87_RS02600at 553.064 kb on + strand, within ABZR87_RS02600at 553.065 kb on - strand, within ABZR87_RS02600at 553.065 kb on - strand, within ABZR87_RS02600at 553.065 kb on - strand, within ABZR87_RS02600at 553.254 kb on + strand, within ABZR87_RS02600at 553.254 kb on + strand, within ABZR87_RS02600at 553.254 kb on + strand, within ABZR87_RS02600at 553.254 kb on + strand, within ABZR87_RS02600at 553.254 kb on - strand, within ABZR87_RS02600at 553.255 kb on - strand, within ABZR87_RS02600at 553.255 kb on - strand, within ABZR87_RS02600at 553.258 kb on + strand, within ABZR87_RS02600at 553.258 kb on + strand, within ABZR87_RS02600at 553.259 kb on - strand, within ABZR87_RS02600at 553.259 kb on - strand, within ABZR87_RS02600at 553.259 kb on - strand, within ABZR87_RS02600at 553.259 kb on - strand, within ABZR87_RS02600at 553.259 kb on - strand, within ABZR87_RS02600at 553.450 kb on + strand, within ABZR87_RS02600at 553.451 kb on - strand, within ABZR87_RS02600at 553.456 kb on + strand, within ABZR87_RS02600at 553.457 kb on - strand, within ABZR87_RS02600

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Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 2; outgrowth in LB
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550,905 + ABZR87_RS02590 0.10 -3.1
550,905 + ABZR87_RS02590 0.10 +0.7
550,905 + ABZR87_RS02590 0.10 -2.1
550,906 - ABZR87_RS02590 0.10 -3.2
550,906 - ABZR87_RS02590 0.10 -3.2
550,906 - ABZR87_RS02590 0.10 -1.8
551,228 + ABZR87_RS02590 0.39 -3.2
551,228 + ABZR87_RS02590 0.39 -3.0
551,228 + ABZR87_RS02590 0.39 -1.8
551,228 + ABZR87_RS02590 0.39 -3.3
551,229 - ABZR87_RS02590 0.39 -3.3
551,314 + ABZR87_RS02590 0.47 -3.4
551,315 - ABZR87_RS02590 0.47 +0.7
551,315 - ABZR87_RS02590 0.47 -1.6
551,396 + ABZR87_RS02590 0.54 -1.6
551,396 + ABZR87_RS02590 0.54 -1.4
551,397 - ABZR87_RS02590 0.54 -2.5
551,397 - ABZR87_RS02590 0.54 -2.1
551,548 + ABZR87_RS02590 0.68 -2.1
551,548 + ABZR87_RS02590 0.68 +0.3
551,548 + ABZR87_RS02590 0.68 -2.0
551,548 + ABZR87_RS02590 0.68 -3.1
551,548 + ABZR87_RS02590 0.68 -2.3
551,548 + ABZR87_RS02590 0.68 -1.8
551,549 - ABZR87_RS02590 0.68 -3.5
551,549 - ABZR87_RS02590 0.68 -1.5
551,549 - ABZR87_RS02590 0.68 -2.7
551,549 - ABZR87_RS02590 0.68 -0.7
551,549 - ABZR87_RS02590 0.68 -1.9
551,755 + ABZR87_RS02590 0.87 -3.4
551,755 + ABZR87_RS02590 0.87 -4.6
551,755 + ABZR87_RS02590 0.87 -2.4
551,755 + ABZR87_RS02590 0.87 +0.5
551,755 + ABZR87_RS02590 0.87 -2.0
551,755 + ABZR87_RS02590 0.87 -3.5
551,755 + ABZR87_RS02590 0.87 -3.1
551,756 - ABZR87_RS02590 0.87 -4.3
551,756 - ABZR87_RS02590 0.87 -2.6
551,756 - ABZR87_RS02590 0.87 -1.9
551,756 - ABZR87_RS02590 0.87 -3.6
551,756 - ABZR87_RS02590 0.87 -1.8
551,756 - ABZR87_RS02590 0.87 -1.5
551,756 - ABZR87_RS02590 0.87 -3.4
551,852 + -1.6
551,894 + -2.1
551,894 + -2.3
551,894 + -1.6
551,895 - -3.4
551,895 - -3.4
551,895 - -3.0
551,983 + ABZR87_RS02595 0.15 -0.1
551,983 + ABZR87_RS02595 0.15 -0.9
551,983 + ABZR87_RS02595 0.15 -3.7
551,984 - ABZR87_RS02595 0.15 +0.5
551,984 - ABZR87_RS02595 0.15 -3.5
551,984 - ABZR87_RS02595 0.15 -4.5
551,984 - ABZR87_RS02595 0.15 -3.6
551,986 + ABZR87_RS02595 0.16 -3.4
551,986 + ABZR87_RS02595 0.16 -1.7
551,986 + ABZR87_RS02595 0.16 -2.9
551,986 + ABZR87_RS02595 0.16 -2.1
551,986 + ABZR87_RS02595 0.16 -3.8
551,986 + ABZR87_RS02595 0.16 -3.0
551,987 - ABZR87_RS02595 0.16 -4.6
551,987 - ABZR87_RS02595 0.16 -0.6
551,987 - ABZR87_RS02595 0.16 -4.0
551,987 - ABZR87_RS02595 0.16 -4.2
551,987 - ABZR87_RS02595 0.16 -2.6
551,987 - ABZR87_RS02595 0.16 -2.2
552,045 + ABZR87_RS02595 0.26 -3.3
552,045 + ABZR87_RS02595 0.26 -2.5
552,045 + ABZR87_RS02595 0.26 -2.6
552,142 - ABZR87_RS02595 0.43 -0.7
552,142 - ABZR87_RS02595 0.43 -2.9
552,142 - ABZR87_RS02595 0.43 -1.6
552,142 - ABZR87_RS02595 0.43 -3.9
552,142 - ABZR87_RS02595 0.43 -0.3
552,168 + ABZR87_RS02595 0.47 -4.0
552,168 + ABZR87_RS02595 0.47 -6.0
552,168 + ABZR87_RS02595 0.47 -0.3
552,168 + ABZR87_RS02595 0.47 -3.2
552,168 + ABZR87_RS02595 0.47 -3.7
552,169 - ABZR87_RS02595 0.47 -4.7
552,503 + -0.7
552,503 + -2.5
552,504 - -0.3
552,504 - -0.5
552,768 + +1.6
552,768 + -1.6
552,768 + +0.5
552,769 - +1.1
552,769 - +1.2
552,769 - +1.9
552,772 + +2.4
552,773 - +0.3
552,773 - +1.5
552,862 + ABZR87_RS02600 0.12 +1.7
552,863 - ABZR87_RS02600 0.12 +1.4
552,866 + ABZR87_RS02600 0.12 +1.9
552,866 + ABZR87_RS02600 0.12 +0.8
552,866 + ABZR87_RS02600 0.12 +1.3
552,866 + ABZR87_RS02600 0.12 +1.5
552,866 + ABZR87_RS02600 0.12 +0.7
552,866 + ABZR87_RS02600 0.12 +1.4
552,866 + ABZR87_RS02600 0.12 +2.1
552,866 + ABZR87_RS02600 0.12 +1.4
552,866 + ABZR87_RS02600 0.12 +1.3
552,866 + ABZR87_RS02600 0.12 +1.9
552,867 - ABZR87_RS02600 0.12 +1.7
552,867 - ABZR87_RS02600 0.12 +1.4
552,867 - ABZR87_RS02600 0.12 +1.7
552,867 - ABZR87_RS02600 0.12 +1.5
552,867 - ABZR87_RS02600 0.12 +2.2
552,867 - ABZR87_RS02600 0.12 +1.9
552,867 - ABZR87_RS02600 0.12 +2.2
552,867 - ABZR87_RS02600 0.12 +0.6
552,867 - ABZR87_RS02600 0.12 +2.4
552,996 + ABZR87_RS02600 0.18 +1.4
553,009 + ABZR87_RS02600 0.19 +0.4
553,010 - ABZR87_RS02600 0.19 +0.9
553,010 - ABZR87_RS02600 0.19 +2.0
553,064 + ABZR87_RS02600 0.21 +1.4
553,065 - ABZR87_RS02600 0.21 -0.7
553,065 - ABZR87_RS02600 0.21 -0.3
553,065 - ABZR87_RS02600 0.21 +2.5
553,254 + ABZR87_RS02600 0.30 +1.9
553,254 + ABZR87_RS02600 0.30 +1.5
553,254 + ABZR87_RS02600 0.30 +2.4
553,254 + ABZR87_RS02600 0.30 +1.9
553,254 - ABZR87_RS02600 0.30 +1.7
553,255 - ABZR87_RS02600 0.30 +2.7
553,255 - ABZR87_RS02600 0.30 +2.1
553,258 + ABZR87_RS02600 0.30 +1.3
553,258 + ABZR87_RS02600 0.30 +1.3
553,259 - ABZR87_RS02600 0.30 +0.8
553,259 - ABZR87_RS02600 0.30 +0.9
553,259 - ABZR87_RS02600 0.30 +0.7
553,259 - ABZR87_RS02600 0.30 +1.3
553,259 - ABZR87_RS02600 0.30 +1.7
553,450 + ABZR87_RS02600 0.39 +1.6
553,451 - ABZR87_RS02600 0.39 +1.6
553,456 + ABZR87_RS02600 0.39 +0.7
553,457 - ABZR87_RS02600 0.39 +1.3

Or see this region's nucleotide sequence