Experiment: soil EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02320 and ABZR87_RS02325 are separated by 0 nucleotides ABZR87_RS02325 and ABZR87_RS02330 are separated by 3 nucleotides ABZR87_RS02330 and ABZR87_RS02335 are separated by 9 nucleotides
ABZR87_RS02320: ABZR87_RS02320 - cytochrome o ubiquinol oxidase subunit IV, at 496,791 to 497,159
_RS02320
ABZR87_RS02325: ABZR87_RS02325 - cytochrome o ubiquinol oxidase subunit III, at 497,160 to 497,801
_RS02325
ABZR87_RS02330: ABZR87_RS02330 - cytochrome o ubiquinol oxidase subunit I, at 497,805 to 499,784
_RS02330
ABZR87_RS02335: ABZR87_RS02335 - ubiquinol oxidase subunit II, at 499,794 to 500,747
_RS02335
Position (kb) 497
498
499
500 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 496.820 kb on + strand at 496.821 kb on - strand at 496.821 kb on - strand at 496.930 kb on + strand, within ABZR87_RS02320 at 496.930 kb on + strand, within ABZR87_RS02320 at 496.930 kb on + strand, within ABZR87_RS02320 at 496.931 kb on - strand, within ABZR87_RS02320 at 496.931 kb on - strand, within ABZR87_RS02320 at 497.161 kb on + strand at 497.162 kb on - strand at 497.179 kb on + strand at 497.179 kb on + strand at 497.179 kb on + strand at 497.180 kb on - strand at 497.180 kb on - strand at 497.180 kb on - strand at 497.367 kb on + strand, within ABZR87_RS02325 at 497.527 kb on + strand, within ABZR87_RS02325 at 497.527 kb on + strand, within ABZR87_RS02325 at 497.528 kb on - strand, within ABZR87_RS02325 at 497.528 kb on - strand, within ABZR87_RS02325 at 497.572 kb on + strand, within ABZR87_RS02325 at 497.572 kb on + strand, within ABZR87_RS02325 at 497.573 kb on - strand, within ABZR87_RS02325 at 497.660 kb on + strand, within ABZR87_RS02325 at 497.661 kb on - strand, within ABZR87_RS02325 at 497.680 kb on + strand, within ABZR87_RS02325 at 497.681 kb on - strand, within ABZR87_RS02325 at 497.784 kb on + strand at 497.785 kb on - strand at 497.785 kb on - strand at 497.806 kb on + strand at 497.806 kb on + strand at 497.834 kb on - strand at 497.872 kb on + strand at 497.873 kb on - strand at 497.873 kb on - strand at 497.873 kb on - strand at 497.873 kb on - strand at 497.876 kb on - strand at 497.876 kb on - strand at 498.031 kb on + strand, within ABZR87_RS02330 at 498.043 kb on + strand, within ABZR87_RS02330 at 498.136 kb on + strand, within ABZR87_RS02330 at 498.137 kb on - strand, within ABZR87_RS02330 at 498.137 kb on - strand, within ABZR87_RS02330 at 498.173 kb on + strand, within ABZR87_RS02330 at 498.173 kb on + strand, within ABZR87_RS02330 at 498.173 kb on + strand, within ABZR87_RS02330 at 498.329 kb on + strand, within ABZR87_RS02330 at 498.370 kb on + strand, within ABZR87_RS02330 at 498.370 kb on + strand, within ABZR87_RS02330 at 498.370 kb on + strand, within ABZR87_RS02330 at 498.371 kb on - strand, within ABZR87_RS02330 at 498.371 kb on - strand, within ABZR87_RS02330 at 498.391 kb on + strand, within ABZR87_RS02330 at 498.391 kb on + strand, within ABZR87_RS02330 at 498.392 kb on - strand, within ABZR87_RS02330 at 498.473 kb on - strand, within ABZR87_RS02330 at 498.479 kb on + strand, within ABZR87_RS02330 at 498.479 kb on + strand, within ABZR87_RS02330 at 498.480 kb on - strand, within ABZR87_RS02330 at 498.480 kb on - strand, within ABZR87_RS02330 at 498.480 kb on - strand, within ABZR87_RS02330 at 498.491 kb on - strand, within ABZR87_RS02330 at 498.673 kb on + strand, within ABZR87_RS02330 at 498.673 kb on + strand, within ABZR87_RS02330 at 498.673 kb on + strand, within ABZR87_RS02330 at 498.674 kb on - strand, within ABZR87_RS02330 at 498.922 kb on + strand, within ABZR87_RS02330 at 498.922 kb on + strand, within ABZR87_RS02330 at 498.922 kb on + strand, within ABZR87_RS02330 at 498.922 kb on + strand, within ABZR87_RS02330 at 498.923 kb on - strand, within ABZR87_RS02330 at 498.923 kb on - strand, within ABZR87_RS02330 at 498.923 kb on - strand, within ABZR87_RS02330 at 498.923 kb on - strand, within ABZR87_RS02330 at 498.961 kb on + strand, within ABZR87_RS02330 at 498.962 kb on - strand, within ABZR87_RS02330 at 498.962 kb on - strand, within ABZR87_RS02330 at 498.962 kb on - strand, within ABZR87_RS02330 at 498.975 kb on - strand, within ABZR87_RS02330 at 499.216 kb on + strand, within ABZR87_RS02330 at 499.216 kb on + strand, within ABZR87_RS02330 at 499.216 kb on + strand, within ABZR87_RS02330 at 499.216 kb on + strand, within ABZR87_RS02330 at 499.217 kb on - strand, within ABZR87_RS02330 at 499.217 kb on - strand, within ABZR87_RS02330 at 499.220 kb on - strand, within ABZR87_RS02330 at 499.220 kb on - strand, within ABZR87_RS02330 at 499.220 kb on - strand, within ABZR87_RS02330 at 499.243 kb on + strand, within ABZR87_RS02330 at 499.243 kb on + strand, within ABZR87_RS02330 at 499.490 kb on - strand, within ABZR87_RS02330 at 499.603 kb on + strand at 499.603 kb on + strand at 499.603 kb on + strand at 499.603 kb on + strand at 499.603 kb on + strand at 499.604 kb on - strand at 499.604 kb on - strand at 499.658 kb on - strand at 499.675 kb on + strand at 499.675 kb on + strand at 499.676 kb on - strand at 499.676 kb on - strand at 499.676 kb on - strand at 499.796 kb on - strand at 499.939 kb on + strand, within ABZR87_RS02335 at 499.939 kb on + strand, within ABZR87_RS02335 at 499.939 kb on + strand, within ABZR87_RS02335 at 499.939 kb on + strand, within ABZR87_RS02335 at 499.939 kb on + strand, within ABZR87_RS02335 at 499.940 kb on - strand, within ABZR87_RS02335 at 499.940 kb on - strand, within ABZR87_RS02335 at 499.940 kb on - strand, within ABZR87_RS02335 at 499.940 kb on - strand, within ABZR87_RS02335 at 499.984 kb on + strand, within ABZR87_RS02335 at 499.984 kb on + strand, within ABZR87_RS02335 at 499.985 kb on - strand, within ABZR87_RS02335 at 500.146 kb on + strand, within ABZR87_RS02335 at 500.224 kb on + strand, within ABZR87_RS02335 at 500.224 kb on + strand, within ABZR87_RS02335 at 500.224 kb on + strand, within ABZR87_RS02335 at 500.224 kb on + strand, within ABZR87_RS02335 at 500.224 kb on + strand, within ABZR87_RS02335 at 500.350 kb on + strand, within ABZR87_RS02335 at 500.425 kb on + strand, within ABZR87_RS02335 at 500.426 kb on - strand, within ABZR87_RS02335 at 500.450 kb on + strand, within ABZR87_RS02335 at 500.450 kb on + strand, within ABZR87_RS02335 at 500.450 kb on + strand, within ABZR87_RS02335 at 500.451 kb on - strand, within ABZR87_RS02335 at 500.452 kb on + strand, within ABZR87_RS02335 at 500.452 kb on + strand, within ABZR87_RS02335 at 500.452 kb on + strand, within ABZR87_RS02335 at 500.452 kb on + strand, within ABZR87_RS02335 at 500.452 kb on + strand, within ABZR87_RS02335 at 500.452 kb on + strand, within ABZR87_RS02335 at 500.453 kb on - strand, within ABZR87_RS02335 at 500.453 kb on - strand, within ABZR87_RS02335 at 500.453 kb on - strand, within ABZR87_RS02335 at 500.453 kb on - strand, within ABZR87_RS02335 at 500.453 kb on - strand, within ABZR87_RS02335 at 500.453 kb on - strand, within ABZR87_RS02335 at 500.543 kb on - strand, within ABZR87_RS02335 at 500.569 kb on + strand, within ABZR87_RS02335 at 500.569 kb on + strand, within ABZR87_RS02335 at 500.747 kb on + strand at 500.747 kb on + strand at 500.747 kb on + strand at 500.747 kb on + strand at 500.747 kb on + strand at 500.747 kb on + strand at 500.747 kb on + strand at 500.747 kb on + strand at 500.747 kb on + strand at 500.747 kb on + strand at 500.748 kb on - strand at 500.748 kb on - strand at 500.748 kb on - strand at 500.748 kb on - strand at 500.748 kb on - strand at 500.748 kb on - strand at 500.748 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 2; outgrowth in LB remove 496,820 + -3.0 496,821 - -2.7 496,821 - -1.9 496,930 + ABZR87_RS02320 0.38 +0.3 496,930 + ABZR87_RS02320 0.38 -1.4 496,930 + ABZR87_RS02320 0.38 -0.1 496,931 - ABZR87_RS02320 0.38 -2.6 496,931 - ABZR87_RS02320 0.38 -0.6 497,161 + -2.6 497,162 - -1.5 497,179 + -0.2 497,179 + -3.0 497,179 + -0.8 497,180 - -3.1 497,180 - -2.0 497,180 - -2.2 497,367 + ABZR87_RS02325 0.32 -0.0 497,527 + ABZR87_RS02325 0.57 -1.8 497,527 + ABZR87_RS02325 0.57 +0.7 497,528 - ABZR87_RS02325 0.57 -1.0 497,528 - ABZR87_RS02325 0.57 -3.0 497,572 + ABZR87_RS02325 0.64 -2.0 497,572 + ABZR87_RS02325 0.64 -1.4 497,573 - ABZR87_RS02325 0.64 +0.9 497,660 + ABZR87_RS02325 0.78 -1.2 497,661 - ABZR87_RS02325 0.78 -0.2 497,680 + ABZR87_RS02325 0.81 -0.6 497,681 - ABZR87_RS02325 0.81 -1.1 497,784 + -0.8 497,785 - +0.2 497,785 - -1.6 497,806 + +0.0 497,806 + -3.1 497,834 - -2.7 497,872 + -0.8 497,873 - -0.1 497,873 - +0.5 497,873 - +0.4 497,873 - +0.1 497,876 - -1.9 497,876 - -1.5 498,031 + ABZR87_RS02330 0.11 +0.5 498,043 + ABZR87_RS02330 0.12 -1.3 498,136 + ABZR87_RS02330 0.17 -0.4 498,137 - ABZR87_RS02330 0.17 -1.1 498,137 - ABZR87_RS02330 0.17 -2.0 498,173 + ABZR87_RS02330 0.19 -2.4 498,173 + ABZR87_RS02330 0.19 -2.1 498,173 + ABZR87_RS02330 0.19 +0.7 498,329 + ABZR87_RS02330 0.26 +0.1 498,370 + ABZR87_RS02330 0.29 -1.6 498,370 + ABZR87_RS02330 0.29 +0.8 498,370 + ABZR87_RS02330 0.29 -2.3 498,371 - ABZR87_RS02330 0.29 -1.3 498,371 - ABZR87_RS02330 0.29 -2.0 498,391 + ABZR87_RS02330 0.30 +0.1 498,391 + ABZR87_RS02330 0.30 -2.3 498,392 - ABZR87_RS02330 0.30 +0.7 498,473 - ABZR87_RS02330 0.34 -1.3 498,479 + ABZR87_RS02330 0.34 +0.4 498,479 + ABZR87_RS02330 0.34 -0.8 498,480 - ABZR87_RS02330 0.34 -1.0 498,480 - ABZR87_RS02330 0.34 -1.8 498,480 - ABZR87_RS02330 0.34 +1.4 498,491 - ABZR87_RS02330 0.35 +0.1 498,673 + ABZR87_RS02330 0.44 -3.3 498,673 + ABZR87_RS02330 0.44 -3.6 498,673 + ABZR87_RS02330 0.44 -2.9 498,674 - ABZR87_RS02330 0.44 -1.3 498,922 + ABZR87_RS02330 0.56 -2.5 498,922 + ABZR87_RS02330 0.56 +3.1 498,922 + ABZR87_RS02330 0.56 -3.3 498,922 + ABZR87_RS02330 0.56 -2.0 498,923 - ABZR87_RS02330 0.56 +0.1 498,923 - ABZR87_RS02330 0.56 -2.6 498,923 - ABZR87_RS02330 0.56 -1.3 498,923 - ABZR87_RS02330 0.56 -0.9 498,961 + ABZR87_RS02330 0.58 +1.3 498,962 - ABZR87_RS02330 0.58 -0.1 498,962 - ABZR87_RS02330 0.58 -0.5 498,962 - ABZR87_RS02330 0.58 -2.6 498,975 - ABZR87_RS02330 0.59 -3.1 499,216 + ABZR87_RS02330 0.71 -0.2 499,216 + ABZR87_RS02330 0.71 -2.6 499,216 + ABZR87_RS02330 0.71 -0.8 499,216 + ABZR87_RS02330 0.71 +0.1 499,217 - ABZR87_RS02330 0.71 -0.0 499,217 - ABZR87_RS02330 0.71 +1.6 499,220 - ABZR87_RS02330 0.71 -1.2 499,220 - ABZR87_RS02330 0.71 -0.7 499,220 - ABZR87_RS02330 0.71 -0.5 499,243 + ABZR87_RS02330 0.73 -1.1 499,243 + ABZR87_RS02330 0.73 -2.6 499,490 - ABZR87_RS02330 0.85 -2.3 499,603 + -1.3 499,603 + -2.1 499,603 + +1.0 499,603 + -1.9 499,603 + -0.7 499,604 - -1.4 499,604 - -0.6 499,658 - -0.8 499,675 + -3.2 499,675 + +1.3 499,676 - -0.4 499,676 - -2.0 499,676 - -1.7 499,796 - -1.8 499,939 + ABZR87_RS02335 0.15 -0.1 499,939 + ABZR87_RS02335 0.15 -1.4 499,939 + ABZR87_RS02335 0.15 -1.2 499,939 + ABZR87_RS02335 0.15 -1.8 499,939 + ABZR87_RS02335 0.15 -2.2 499,940 - ABZR87_RS02335 0.15 -0.3 499,940 - ABZR87_RS02335 0.15 -0.8 499,940 - ABZR87_RS02335 0.15 -1.6 499,940 - ABZR87_RS02335 0.15 -0.3 499,984 + ABZR87_RS02335 0.20 -0.9 499,984 + ABZR87_RS02335 0.20 -0.6 499,985 - ABZR87_RS02335 0.20 -1.2 500,146 + ABZR87_RS02335 0.37 -0.4 500,224 + ABZR87_RS02335 0.45 +1.9 500,224 + ABZR87_RS02335 0.45 -2.9 500,224 + ABZR87_RS02335 0.45 +0.8 500,224 + ABZR87_RS02335 0.45 -1.6 500,224 + ABZR87_RS02335 0.45 -1.0 500,350 + ABZR87_RS02335 0.58 +0.0 500,425 + ABZR87_RS02335 0.66 -0.5 500,426 - ABZR87_RS02335 0.66 -3.1 500,450 + ABZR87_RS02335 0.69 -0.1 500,450 + ABZR87_RS02335 0.69 -2.9 500,450 + ABZR87_RS02335 0.69 -1.4 500,451 - ABZR87_RS02335 0.69 +0.8 500,452 + ABZR87_RS02335 0.69 +2.5 500,452 + ABZR87_RS02335 0.69 -1.6 500,452 + ABZR87_RS02335 0.69 -2.0 500,452 + ABZR87_RS02335 0.69 -1.6 500,452 + ABZR87_RS02335 0.69 +1.1 500,452 + ABZR87_RS02335 0.69 -1.0 500,453 - ABZR87_RS02335 0.69 +1.1 500,453 - ABZR87_RS02335 0.69 -2.5 500,453 - ABZR87_RS02335 0.69 -0.4 500,453 - ABZR87_RS02335 0.69 -0.4 500,453 - ABZR87_RS02335 0.69 -1.9 500,453 - ABZR87_RS02335 0.69 -1.7 500,543 - ABZR87_RS02335 0.79 -0.1 500,569 + ABZR87_RS02335 0.81 -0.3 500,569 + ABZR87_RS02335 0.81 -2.6 500,747 + +1.7 500,747 + -0.3 500,747 + -1.6 500,747 + +0.1 500,747 + -0.7 500,747 + -1.9 500,747 + -0.4 500,747 + -1.6 500,747 + -1.7 500,747 + -2.0 500,748 - +2.1 500,748 - -0.2 500,748 - -0.3 500,748 - -0.9 500,748 - +0.0 500,748 - -2.7 500,748 - -2.5
Or see this region's nucleotide sequence