Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02175

Experiment: soil EcoFAB sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02170 and ABZR87_RS02175 are separated by 414 nucleotidesABZR87_RS02175 and ABZR87_RS02180 are separated by 12 nucleotides ABZR87_RS02170: ABZR87_RS02170 - uracil-DNA glycosylase, at 464,202 to 464,993 _RS02170 ABZR87_RS02175: ABZR87_RS02175 - FUSC family protein, at 465,408 to 467,624 _RS02175 ABZR87_RS02180: ABZR87_RS02180 - M61 family metallopeptidase, at 467,637 to 469,499 _RS02180 Position (kb) 465 466 467 468Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 465.324 kb on + strandat 465.325 kb on - strandat 465.409 kb on + strandat 465.409 kb on + strandat 465.410 kb on - strandat 465.410 kb on - strandat 465.410 kb on - strandat 465.422 kb on + strandat 465.422 kb on + strandat 465.422 kb on + strandat 465.423 kb on - strandat 465.790 kb on + strand, within ABZR87_RS02175at 465.790 kb on + strand, within ABZR87_RS02175at 465.790 kb on + strand, within ABZR87_RS02175at 465.791 kb on - strand, within ABZR87_RS02175at 465.791 kb on - strand, within ABZR87_RS02175at 465.791 kb on - strand, within ABZR87_RS02175at 465.791 kb on - strand, within ABZR87_RS02175at 465.791 kb on - strand, within ABZR87_RS02175at 465.791 kb on - strand, within ABZR87_RS02175at 466.045 kb on + strand, within ABZR87_RS02175at 466.045 kb on + strand, within ABZR87_RS02175at 466.045 kb on + strand, within ABZR87_RS02175at 466.045 kb on + strand, within ABZR87_RS02175at 466.045 kb on + strand, within ABZR87_RS02175at 466.045 kb on + strand, within ABZR87_RS02175at 466.045 kb on + strand, within ABZR87_RS02175at 466.045 kb on + strand, within ABZR87_RS02175at 466.045 kb on + strand, within ABZR87_RS02175at 466.045 kb on + strand, within ABZR87_RS02175at 466.045 kb on + strand, within ABZR87_RS02175at 466.046 kb on - strand, within ABZR87_RS02175at 466.046 kb on - strand, within ABZR87_RS02175at 466.046 kb on - strand, within ABZR87_RS02175at 466.046 kb on - strand, within ABZR87_RS02175at 466.046 kb on - strand, within ABZR87_RS02175at 466.046 kb on - strand, within ABZR87_RS02175at 466.046 kb on - strand, within ABZR87_RS02175at 466.046 kb on - strand, within ABZR87_RS02175at 466.046 kb on - strand, within ABZR87_RS02175at 466.046 kb on - strand, within ABZR87_RS02175at 466.046 kb on - strand, within ABZR87_RS02175at 466.046 kb on - strand, within ABZR87_RS02175at 466.174 kb on + strand, within ABZR87_RS02175at 466.174 kb on + strand, within ABZR87_RS02175at 466.175 kb on - strand, within ABZR87_RS02175at 466.222 kb on + strand, within ABZR87_RS02175at 466.222 kb on + strand, within ABZR87_RS02175at 466.223 kb on - strand, within ABZR87_RS02175at 466.223 kb on - strand, within ABZR87_RS02175at 466.223 kb on - strand, within ABZR87_RS02175at 466.223 kb on - strand, within ABZR87_RS02175at 466.223 kb on - strand, within ABZR87_RS02175at 466.223 kb on - strand, within ABZR87_RS02175at 466.381 kb on + strand, within ABZR87_RS02175at 466.395 kb on - strand, within ABZR87_RS02175at 466.395 kb on - strand, within ABZR87_RS02175at 466.395 kb on - strand, within ABZR87_RS02175at 466.395 kb on - strand, within ABZR87_RS02175at 466.395 kb on - strand, within ABZR87_RS02175at 466.396 kb on + strand, within ABZR87_RS02175at 466.397 kb on - strand, within ABZR87_RS02175at 466.510 kb on + strand, within ABZR87_RS02175at 466.511 kb on - strand, within ABZR87_RS02175at 466.732 kb on + strand, within ABZR87_RS02175at 466.733 kb on - strand, within ABZR87_RS02175at 466.733 kb on - strand, within ABZR87_RS02175at 466.774 kb on + strand, within ABZR87_RS02175at 466.774 kb on + strand, within ABZR87_RS02175at 466.774 kb on + strand, within ABZR87_RS02175at 466.775 kb on - strand, within ABZR87_RS02175at 466.870 kb on + strand, within ABZR87_RS02175at 466.871 kb on - strand, within ABZR87_RS02175at 466.871 kb on - strand, within ABZR87_RS02175at 466.894 kb on + strand, within ABZR87_RS02175at 466.894 kb on + strand, within ABZR87_RS02175at 466.894 kb on + strand, within ABZR87_RS02175at 466.894 kb on + strand, within ABZR87_RS02175at 466.894 kb on + strand, within ABZR87_RS02175at 466.895 kb on - strand, within ABZR87_RS02175at 466.895 kb on - strand, within ABZR87_RS02175at 466.895 kb on - strand, within ABZR87_RS02175at 466.895 kb on - strand, within ABZR87_RS02175at 466.895 kb on - strand, within ABZR87_RS02175at 466.895 kb on - strand, within ABZR87_RS02175at 466.900 kb on + strand, within ABZR87_RS02175at 466.900 kb on + strand, within ABZR87_RS02175at 466.901 kb on - strand, within ABZR87_RS02175at 466.901 kb on - strand, within ABZR87_RS02175at 466.901 kb on - strand, within ABZR87_RS02175at 466.901 kb on - strand, within ABZR87_RS02175at 467.062 kb on + strand, within ABZR87_RS02175at 467.062 kb on + strand, within ABZR87_RS02175at 467.062 kb on + strand, within ABZR87_RS02175at 467.062 kb on + strand, within ABZR87_RS02175at 467.062 kb on + strand, within ABZR87_RS02175at 467.063 kb on - strand, within ABZR87_RS02175at 467.087 kb on - strand, within ABZR87_RS02175at 467.087 kb on - strand, within ABZR87_RS02175at 467.101 kb on + strand, within ABZR87_RS02175at 467.133 kb on - strand, within ABZR87_RS02175at 467.133 kb on - strand, within ABZR87_RS02175at 467.174 kb on + strand, within ABZR87_RS02175at 467.174 kb on + strand, within ABZR87_RS02175at 467.174 kb on + strand, within ABZR87_RS02175at 467.174 kb on + strand, within ABZR87_RS02175at 467.175 kb on - strand, within ABZR87_RS02175at 467.175 kb on - strand, within ABZR87_RS02175at 467.176 kb on + strand, within ABZR87_RS02175at 467.176 kb on + strand, within ABZR87_RS02175at 467.176 kb on + strand, within ABZR87_RS02175at 467.176 kb on + strand, within ABZR87_RS02175at 467.176 kb on + strand, within ABZR87_RS02175at 467.176 kb on + strand, within ABZR87_RS02175at 467.176 kb on + strand, within ABZR87_RS02175at 467.176 kb on + strand, within ABZR87_RS02175at 467.177 kb on - strand, within ABZR87_RS02175at 467.177 kb on - strand, within ABZR87_RS02175at 467.177 kb on - strand, within ABZR87_RS02175at 467.363 kb on - strand, within ABZR87_RS02175at 467.562 kb on - strandat 467.581 kb on + strandat 467.581 kb on + strandat 467.581 kb on + strandat 467.582 kb on - strandat 467.582 kb on - strandat 467.582 kb on - strandat 467.582 kb on - strandat 467.591 kb on - strandat 467.617 kb on + strandat 467.617 kb on + strandat 467.618 kb on - strandat 467.618 kb on - strandat 467.630 kb on + strandat 467.962 kb on + strand, within ABZR87_RS02180at 468.184 kb on + strand, within ABZR87_RS02180at 468.184 kb on + strand, within ABZR87_RS02180at 468.185 kb on - strand, within ABZR87_RS02180at 468.199 kb on + strand, within ABZR87_RS02180at 468.199 kb on + strand, within ABZR87_RS02180at 468.199 kb on + strand, within ABZR87_RS02180at 468.199 kb on + strand, within ABZR87_RS02180at 468.199 kb on + strand, within ABZR87_RS02180at 468.199 kb on + strand, within ABZR87_RS02180at 468.200 kb on - strand, within ABZR87_RS02180at 468.200 kb on - strand, within ABZR87_RS02180at 468.200 kb on - strand, within ABZR87_RS02180at 468.204 kb on + strand, within ABZR87_RS02180at 468.304 kb on + strand, within ABZR87_RS02180at 468.304 kb on + strand, within ABZR87_RS02180at 468.307 kb on + strand, within ABZR87_RS02180at 468.307 kb on + strand, within ABZR87_RS02180at 468.307 kb on + strand, within ABZR87_RS02180at 468.307 kb on + strand, within ABZR87_RS02180at 468.307 kb on + strand, within ABZR87_RS02180at 468.307 kb on + strand, within ABZR87_RS02180at 468.307 kb on + strand, within ABZR87_RS02180at 468.307 kb on + strand, within ABZR87_RS02180at 468.307 kb on + strand, within ABZR87_RS02180at 468.308 kb on - strand, within ABZR87_RS02180at 468.308 kb on - strand, within ABZR87_RS02180at 468.308 kb on - strand, within ABZR87_RS02180at 468.346 kb on + strand, within ABZR87_RS02180at 468.346 kb on + strand, within ABZR87_RS02180at 468.346 kb on + strand, within ABZR87_RS02180at 468.347 kb on - strand, within ABZR87_RS02180at 468.349 kb on + strand, within ABZR87_RS02180at 468.350 kb on - strand, within ABZR87_RS02180at 468.350 kb on - strand, within ABZR87_RS02180at 468.350 kb on - strand, within ABZR87_RS02180at 468.448 kb on + strand, within ABZR87_RS02180at 468.449 kb on - strand, within ABZR87_RS02180at 468.449 kb on - strand, within ABZR87_RS02180at 468.496 kb on + strand, within ABZR87_RS02180at 468.496 kb on + strand, within ABZR87_RS02180at 468.497 kb on - strand, within ABZR87_RS02180at 468.497 kb on - strand, within ABZR87_RS02180at 468.497 kb on - strand, within ABZR87_RS02180at 468.497 kb on - strand, within ABZR87_RS02180at 468.497 kb on - strand, within ABZR87_RS02180at 468.499 kb on + strand, within ABZR87_RS02180at 468.499 kb on + strand, within ABZR87_RS02180at 468.500 kb on - strand, within ABZR87_RS02180at 468.500 kb on - strand, within ABZR87_RS02180at 468.560 kb on - strand, within ABZR87_RS02180at 468.610 kb on + strand, within ABZR87_RS02180at 468.610 kb on + strand, within ABZR87_RS02180at 468.610 kb on + strand, within ABZR87_RS02180at 468.611 kb on - strand, within ABZR87_RS02180

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Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 2; outgrowth in LB
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465,324 + +0.3
465,325 - -1.0
465,409 + -0.8
465,409 + +0.1
465,410 - +0.5
465,410 - -0.9
465,410 - +0.6
465,422 + +0.1
465,422 + +1.3
465,422 + -0.2
465,423 - +0.4
465,790 + ABZR87_RS02175 0.17 +0.2
465,790 + ABZR87_RS02175 0.17 +1.0
465,790 + ABZR87_RS02175 0.17 -0.1
465,791 - ABZR87_RS02175 0.17 -0.0
465,791 - ABZR87_RS02175 0.17 +0.2
465,791 - ABZR87_RS02175 0.17 -0.2
465,791 - ABZR87_RS02175 0.17 +1.0
465,791 - ABZR87_RS02175 0.17 +0.0
465,791 - ABZR87_RS02175 0.17 -0.6
466,045 + ABZR87_RS02175 0.29 -0.6
466,045 + ABZR87_RS02175 0.29 -1.4
466,045 + ABZR87_RS02175 0.29 +0.5
466,045 + ABZR87_RS02175 0.29 +0.2
466,045 + ABZR87_RS02175 0.29 +1.5
466,045 + ABZR87_RS02175 0.29 -2.0
466,045 + ABZR87_RS02175 0.29 -0.9
466,045 + ABZR87_RS02175 0.29 -0.1
466,045 + ABZR87_RS02175 0.29 -1.2
466,045 + ABZR87_RS02175 0.29 +0.0
466,045 + ABZR87_RS02175 0.29 -0.0
466,046 - ABZR87_RS02175 0.29 -2.5
466,046 - ABZR87_RS02175 0.29 -0.9
466,046 - ABZR87_RS02175 0.29 +0.8
466,046 - ABZR87_RS02175 0.29 +0.5
466,046 - ABZR87_RS02175 0.29 +1.6
466,046 - ABZR87_RS02175 0.29 +1.5
466,046 - ABZR87_RS02175 0.29 +0.7
466,046 - ABZR87_RS02175 0.29 -1.2
466,046 - ABZR87_RS02175 0.29 -0.5
466,046 - ABZR87_RS02175 0.29 -0.9
466,046 - ABZR87_RS02175 0.29 +0.5
466,046 - ABZR87_RS02175 0.29 -1.2
466,174 + ABZR87_RS02175 0.35 -0.1
466,174 + ABZR87_RS02175 0.35 -0.2
466,175 - ABZR87_RS02175 0.35 -0.1
466,222 + ABZR87_RS02175 0.37 -0.9
466,222 + ABZR87_RS02175 0.37 +0.4
466,223 - ABZR87_RS02175 0.37 -1.7
466,223 - ABZR87_RS02175 0.37 +0.2
466,223 - ABZR87_RS02175 0.37 -0.8
466,223 - ABZR87_RS02175 0.37 -0.3
466,223 - ABZR87_RS02175 0.37 -0.8
466,223 - ABZR87_RS02175 0.37 +2.5
466,381 + ABZR87_RS02175 0.44 +0.7
466,395 - ABZR87_RS02175 0.45 -0.6
466,395 - ABZR87_RS02175 0.45 +0.6
466,395 - ABZR87_RS02175 0.45 +0.6
466,395 - ABZR87_RS02175 0.45 +0.1
466,395 - ABZR87_RS02175 0.45 -0.1
466,396 + ABZR87_RS02175 0.45 -0.0
466,397 - ABZR87_RS02175 0.45 -0.8
466,510 + ABZR87_RS02175 0.50 -0.7
466,511 - ABZR87_RS02175 0.50 -1.2
466,732 + ABZR87_RS02175 0.60 -0.4
466,733 - ABZR87_RS02175 0.60 -2.0
466,733 - ABZR87_RS02175 0.60 +0.1
466,774 + ABZR87_RS02175 0.62 -0.6
466,774 + ABZR87_RS02175 0.62 -2.2
466,774 + ABZR87_RS02175 0.62 +1.3
466,775 - ABZR87_RS02175 0.62 -1.8
466,870 + ABZR87_RS02175 0.66 +0.6
466,871 - ABZR87_RS02175 0.66 -0.1
466,871 - ABZR87_RS02175 0.66 -0.7
466,894 + ABZR87_RS02175 0.67 -0.2
466,894 + ABZR87_RS02175 0.67 -1.4
466,894 + ABZR87_RS02175 0.67 -2.1
466,894 + ABZR87_RS02175 0.67 -0.4
466,894 + ABZR87_RS02175 0.67 +0.4
466,895 - ABZR87_RS02175 0.67 -1.1
466,895 - ABZR87_RS02175 0.67 +0.5
466,895 - ABZR87_RS02175 0.67 +0.0
466,895 - ABZR87_RS02175 0.67 -1.3
466,895 - ABZR87_RS02175 0.67 -0.2
466,895 - ABZR87_RS02175 0.67 -0.6
466,900 + ABZR87_RS02175 0.67 -0.5
466,900 + ABZR87_RS02175 0.67 -1.0
466,901 - ABZR87_RS02175 0.67 -0.5
466,901 - ABZR87_RS02175 0.67 -1.7
466,901 - ABZR87_RS02175 0.67 -0.9
466,901 - ABZR87_RS02175 0.67 -0.1
467,062 + ABZR87_RS02175 0.75 -0.2
467,062 + ABZR87_RS02175 0.75 -2.1
467,062 + ABZR87_RS02175 0.75 +0.1
467,062 + ABZR87_RS02175 0.75 -0.7
467,062 + ABZR87_RS02175 0.75 +0.0
467,063 - ABZR87_RS02175 0.75 -0.5
467,087 - ABZR87_RS02175 0.76 -0.2
467,087 - ABZR87_RS02175 0.76 -1.4
467,101 + ABZR87_RS02175 0.76 +0.1
467,133 - ABZR87_RS02175 0.78 +0.6
467,133 - ABZR87_RS02175 0.78 -1.5
467,174 + ABZR87_RS02175 0.80 -0.1
467,174 + ABZR87_RS02175 0.80 +0.6
467,174 + ABZR87_RS02175 0.80 +0.7
467,174 + ABZR87_RS02175 0.80 +0.7
467,175 - ABZR87_RS02175 0.80 +0.4
467,175 - ABZR87_RS02175 0.80 -3.3
467,176 + ABZR87_RS02175 0.80 +1.4
467,176 + ABZR87_RS02175 0.80 +1.2
467,176 + ABZR87_RS02175 0.80 +0.2
467,176 + ABZR87_RS02175 0.80 +0.0
467,176 + ABZR87_RS02175 0.80 -0.2
467,176 + ABZR87_RS02175 0.80 -0.0
467,176 + ABZR87_RS02175 0.80 +0.4
467,176 + ABZR87_RS02175 0.80 -0.2
467,177 - ABZR87_RS02175 0.80 -0.1
467,177 - ABZR87_RS02175 0.80 -2.8
467,177 - ABZR87_RS02175 0.80 +1.2
467,363 - ABZR87_RS02175 0.88 -1.0
467,562 - +0.2
467,581 + -1.6
467,581 + +0.2
467,581 + -0.1
467,582 - -2.4
467,582 - -1.4
467,582 - -1.0
467,582 - -2.7
467,591 - +0.0
467,617 + +0.0
467,617 + +0.1
467,618 - +0.3
467,618 - +1.1
467,630 + +0.3
467,962 + ABZR87_RS02180 0.17 +0.3
468,184 + ABZR87_RS02180 0.29 -1.2
468,184 + ABZR87_RS02180 0.29 -0.8
468,185 - ABZR87_RS02180 0.29 +1.0
468,199 + ABZR87_RS02180 0.30 -0.6
468,199 + ABZR87_RS02180 0.30 -3.1
468,199 + ABZR87_RS02180 0.30 +0.9
468,199 + ABZR87_RS02180 0.30 -1.4
468,199 + ABZR87_RS02180 0.30 -3.0
468,199 + ABZR87_RS02180 0.30 -0.3
468,200 - ABZR87_RS02180 0.30 +1.0
468,200 - ABZR87_RS02180 0.30 -0.6
468,200 - ABZR87_RS02180 0.30 -0.4
468,204 + ABZR87_RS02180 0.30 -0.9
468,304 + ABZR87_RS02180 0.36 +0.5
468,304 + ABZR87_RS02180 0.36 +0.5
468,307 + ABZR87_RS02180 0.36 +0.8
468,307 + ABZR87_RS02180 0.36 +0.0
468,307 + ABZR87_RS02180 0.36 +0.6
468,307 + ABZR87_RS02180 0.36 -0.6
468,307 + ABZR87_RS02180 0.36 +0.5
468,307 + ABZR87_RS02180 0.36 -0.1
468,307 + ABZR87_RS02180 0.36 -2.1
468,307 + ABZR87_RS02180 0.36 -1.4
468,307 + ABZR87_RS02180 0.36 -1.3
468,308 - ABZR87_RS02180 0.36 -0.6
468,308 - ABZR87_RS02180 0.36 +0.1
468,308 - ABZR87_RS02180 0.36 +0.6
468,346 + ABZR87_RS02180 0.38 -1.3
468,346 + ABZR87_RS02180 0.38 -0.3
468,346 + ABZR87_RS02180 0.38 -0.4
468,347 - ABZR87_RS02180 0.38 -0.7
468,349 + ABZR87_RS02180 0.38 +0.5
468,350 - ABZR87_RS02180 0.38 -1.7
468,350 - ABZR87_RS02180 0.38 -1.0
468,350 - ABZR87_RS02180 0.38 -0.0
468,448 + ABZR87_RS02180 0.44 -0.6
468,449 - ABZR87_RS02180 0.44 -0.2
468,449 - ABZR87_RS02180 0.44 +0.3
468,496 + ABZR87_RS02180 0.46 -0.3
468,496 + ABZR87_RS02180 0.46 -1.4
468,497 - ABZR87_RS02180 0.46 -1.6
468,497 - ABZR87_RS02180 0.46 -0.1
468,497 - ABZR87_RS02180 0.46 -0.6
468,497 - ABZR87_RS02180 0.46 +1.2
468,497 - ABZR87_RS02180 0.46 +0.4
468,499 + ABZR87_RS02180 0.46 -1.8
468,499 + ABZR87_RS02180 0.46 +0.7
468,500 - ABZR87_RS02180 0.46 +0.0
468,500 - ABZR87_RS02180 0.46 -1.5
468,560 - ABZR87_RS02180 0.50 -1.2
468,610 + ABZR87_RS02180 0.52 +0.6
468,610 + ABZR87_RS02180 0.52 +0.1
468,610 + ABZR87_RS02180 0.52 +0.2
468,611 - ABZR87_RS02180 0.52 -0.6

Or see this region's nucleotide sequence