Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02045

Experiment: soil EcoFAB sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02040 and ABZR87_RS02045 overlap by 4 nucleotidesABZR87_RS02045 and ABZR87_RS02050 are separated by 54 nucleotides ABZR87_RS02040: ABZR87_RS02040 - phosphoenolpyruvate--protein phosphotransferase, at 436,422 to 438,971 _RS02040 ABZR87_RS02045: ABZR87_RS02045 - 1-phosphofructokinase, at 438,968 to 439,924 _RS02045 ABZR87_RS02050: ABZR87_RS02050 - fructose-specific PTS transporter subunit EIIC, at 439,979 to 441,694 _RS02050 Position (kb) 438 439 440Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 438.169 kb on - strand, within ABZR87_RS02040at 438.169 kb on - strand, within ABZR87_RS02040at 438.178 kb on - strand, within ABZR87_RS02040at 438.178 kb on - strand, within ABZR87_RS02040at 438.178 kb on - strand, within ABZR87_RS02040at 438.606 kb on + strand, within ABZR87_RS02040at 438.606 kb on + strand, within ABZR87_RS02040at 438.606 kb on + strand, within ABZR87_RS02040at 438.606 kb on + strand, within ABZR87_RS02040at 438.606 kb on + strand, within ABZR87_RS02040at 438.607 kb on - strand, within ABZR87_RS02040at 438.799 kb on + strandat 438.799 kb on + strandat 438.799 kb on + strandat 438.800 kb on - strandat 438.800 kb on - strandat 439.421 kb on + strand, within ABZR87_RS02045at 439.422 kb on - strand, within ABZR87_RS02045at 439.422 kb on - strand, within ABZR87_RS02045at 439.422 kb on - strand, within ABZR87_RS02045at 439.422 kb on - strand, within ABZR87_RS02045at 439.573 kb on + strand, within ABZR87_RS02045at 439.573 kb on + strand, within ABZR87_RS02045at 439.574 kb on - strand, within ABZR87_RS02045at 439.574 kb on - strand, within ABZR87_RS02045at 439.574 kb on - strand, within ABZR87_RS02045at 439.574 kb on - strand, within ABZR87_RS02045at 439.733 kb on - strand, within ABZR87_RS02045at 439.733 kb on - strand, within ABZR87_RS02045at 440.075 kb on + strandat 440.076 kb on - strandat 440.684 kb on + strand, within ABZR87_RS02050at 440.684 kb on + strand, within ABZR87_RS02050at 440.684 kb on + strand, within ABZR87_RS02050at 440.684 kb on + strand, within ABZR87_RS02050at 440.777 kb on + strand, within ABZR87_RS02050at 440.777 kb on + strand, within ABZR87_RS02050at 440.777 kb on + strand, within ABZR87_RS02050at 440.777 kb on + strand, within ABZR87_RS02050at 440.777 kb on + strand, within ABZR87_RS02050at 440.777 kb on + strand, within ABZR87_RS02050at 440.777 kb on + strand, within ABZR87_RS02050at 440.777 kb on + strand, within ABZR87_RS02050at 440.777 kb on + strand, within ABZR87_RS02050at 440.777 kb on + strand, within ABZR87_RS02050at 440.777 kb on + strand, within ABZR87_RS02050at 440.777 kb on + strand, within ABZR87_RS02050at 440.777 kb on + strand, within ABZR87_RS02050at 440.778 kb on - strand, within ABZR87_RS02050at 440.778 kb on - strand, within ABZR87_RS02050at 440.778 kb on - strand, within ABZR87_RS02050at 440.778 kb on - strand, within ABZR87_RS02050at 440.778 kb on - strand, within ABZR87_RS02050at 440.778 kb on - strand, within ABZR87_RS02050at 440.778 kb on - strand, within ABZR87_RS02050at 440.778 kb on - strand, within ABZR87_RS02050at 440.778 kb on - strand, within ABZR87_RS02050at 440.778 kb on - strand, within ABZR87_RS02050at 440.778 kb on - strand, within ABZR87_RS02050at 440.778 kb on - strand, within ABZR87_RS02050at 440.778 kb on - strand, within ABZR87_RS02050at 440.876 kb on + strand, within ABZR87_RS02050at 440.876 kb on + strand, within ABZR87_RS02050at 440.885 kb on + strand, within ABZR87_RS02050

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Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 2; outgrowth in LB
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438,169 - ABZR87_RS02040 0.69 -0.5
438,169 - ABZR87_RS02040 0.69 +0.8
438,178 - ABZR87_RS02040 0.69 +0.3
438,178 - ABZR87_RS02040 0.69 +2.7
438,178 - ABZR87_RS02040 0.69 -0.6
438,606 + ABZR87_RS02040 0.86 -0.3
438,606 + ABZR87_RS02040 0.86 -0.0
438,606 + ABZR87_RS02040 0.86 +0.5
438,606 + ABZR87_RS02040 0.86 +0.0
438,606 + ABZR87_RS02040 0.86 -0.5
438,607 - ABZR87_RS02040 0.86 -0.7
438,799 + +0.7
438,799 + -1.1
438,799 + -0.2
438,800 - +0.4
438,800 - +0.2
439,421 + ABZR87_RS02045 0.47 -0.8
439,422 - ABZR87_RS02045 0.47 -0.6
439,422 - ABZR87_RS02045 0.47 -0.9
439,422 - ABZR87_RS02045 0.47 -0.2
439,422 - ABZR87_RS02045 0.47 +1.6
439,573 + ABZR87_RS02045 0.63 -2.1
439,573 + ABZR87_RS02045 0.63 -1.4
439,574 - ABZR87_RS02045 0.63 -3.5
439,574 - ABZR87_RS02045 0.63 +0.8
439,574 - ABZR87_RS02045 0.63 -2.8
439,574 - ABZR87_RS02045 0.63 -0.4
439,733 - ABZR87_RS02045 0.80 -0.4
439,733 - ABZR87_RS02045 0.80 -0.5
440,075 + -0.7
440,076 - -1.7
440,684 + ABZR87_RS02050 0.41 -1.0
440,684 + ABZR87_RS02050 0.41 +0.1
440,684 + ABZR87_RS02050 0.41 +0.4
440,684 + ABZR87_RS02050 0.41 +0.6
440,777 + ABZR87_RS02050 0.47 -0.6
440,777 + ABZR87_RS02050 0.47 +1.3
440,777 + ABZR87_RS02050 0.47 +0.3
440,777 + ABZR87_RS02050 0.47 -0.8
440,777 + ABZR87_RS02050 0.47 -1.2
440,777 + ABZR87_RS02050 0.47 -0.4
440,777 + ABZR87_RS02050 0.47 +0.1
440,777 + ABZR87_RS02050 0.47 -2.2
440,777 + ABZR87_RS02050 0.47 -0.1
440,777 + ABZR87_RS02050 0.47 -1.4
440,777 + ABZR87_RS02050 0.47 -0.4
440,777 + ABZR87_RS02050 0.47 -0.0
440,777 + ABZR87_RS02050 0.47 +0.3
440,778 - ABZR87_RS02050 0.47 +0.6
440,778 - ABZR87_RS02050 0.47 +0.8
440,778 - ABZR87_RS02050 0.47 -0.2
440,778 - ABZR87_RS02050 0.47 -1.9
440,778 - ABZR87_RS02050 0.47 -2.2
440,778 - ABZR87_RS02050 0.47 -0.9
440,778 - ABZR87_RS02050 0.47 -2.8
440,778 - ABZR87_RS02050 0.47 -1.3
440,778 - ABZR87_RS02050 0.47 -2.2
440,778 - ABZR87_RS02050 0.47 -1.3
440,778 - ABZR87_RS02050 0.47 -1.4
440,778 - ABZR87_RS02050 0.47 +1.2
440,778 - ABZR87_RS02050 0.47 -3.6
440,876 + ABZR87_RS02050 0.52 -0.2
440,876 + ABZR87_RS02050 0.52 +0.7
440,885 + ABZR87_RS02050 0.53 +1.6

Or see this region's nucleotide sequence