Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01860

Experiment: soil EcoFAB sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01850 and ABZR87_RS01855 overlap by 1 nucleotidesABZR87_RS01855 and ABZR87_RS01860 are separated by 13 nucleotidesABZR87_RS01860 and ABZR87_RS01865 are separated by 134 nucleotidesABZR87_RS01865 and ABZR87_RS01870 are separated by 8 nucleotides ABZR87_RS01850: ABZR87_RS01850 - type II secretion system F family protein, at 392,844 to 394,109 _RS01850 ABZR87_RS01855: ABZR87_RS01855 - A24 family peptidase, at 394,109 to 394,990 _RS01855 ABZR87_RS01860: ABZR87_RS01860 - dephospho-CoA kinase, at 395,004 to 395,618 _RS01860 ABZR87_RS01865: ABZR87_RS01865 - cell division protein ZapD, at 395,753 to 396,511 _RS01865 ABZR87_RS01870: ABZR87_RS01870 - DNA gyrase inhibitor YacG, at 396,520 to 396,723 _RS01870 Position (kb) 395 396Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 394.074 kb on + strandat 394.074 kb on + strandat 394.074 kb on + strandat 394.074 kb on + strandat 394.074 kb on + strandat 394.074 kb on + strandat 394.075 kb on - strandat 394.075 kb on - strandat 394.075 kb on - strandat 394.075 kb on - strandat 394.075 kb on - strandat 394.075 kb on - strandat 394.075 kb on - strandat 394.075 kb on - strandat 394.259 kb on + strand, within ABZR87_RS01855at 394.259 kb on + strand, within ABZR87_RS01855at 394.259 kb on + strand, within ABZR87_RS01855at 394.259 kb on + strand, within ABZR87_RS01855at 394.259 kb on + strand, within ABZR87_RS01855at 394.260 kb on - strand, within ABZR87_RS01855at 394.260 kb on - strand, within ABZR87_RS01855at 394.260 kb on - strand, within ABZR87_RS01855at 394.260 kb on - strand, within ABZR87_RS01855at 394.304 kb on + strand, within ABZR87_RS01855at 394.304 kb on + strand, within ABZR87_RS01855at 394.304 kb on + strand, within ABZR87_RS01855at 394.304 kb on + strand, within ABZR87_RS01855at 394.304 kb on + strand, within ABZR87_RS01855at 394.304 kb on + strand, within ABZR87_RS01855at 394.304 kb on + strand, within ABZR87_RS01855at 394.304 kb on + strand, within ABZR87_RS01855at 394.304 kb on + strand, within ABZR87_RS01855at 394.304 kb on + strand, within ABZR87_RS01855at 394.304 kb on + strand, within ABZR87_RS01855at 394.305 kb on - strand, within ABZR87_RS01855at 394.305 kb on - strand, within ABZR87_RS01855at 394.305 kb on - strand, within ABZR87_RS01855at 394.305 kb on - strand, within ABZR87_RS01855at 394.305 kb on - strand, within ABZR87_RS01855at 394.305 kb on - strand, within ABZR87_RS01855at 394.305 kb on - strand, within ABZR87_RS01855at 394.377 kb on + strand, within ABZR87_RS01855at 394.377 kb on + strand, within ABZR87_RS01855at 394.440 kb on - strand, within ABZR87_RS01855at 394.485 kb on + strand, within ABZR87_RS01855at 394.485 kb on + strand, within ABZR87_RS01855at 394.486 kb on - strand, within ABZR87_RS01855at 394.685 kb on + strand, within ABZR87_RS01855at 394.686 kb on - strand, within ABZR87_RS01855at 394.707 kb on - strand, within ABZR87_RS01855at 394.707 kb on - strand, within ABZR87_RS01855at 394.707 kb on - strand, within ABZR87_RS01855at 394.715 kb on + strand, within ABZR87_RS01855at 394.715 kb on + strand, within ABZR87_RS01855at 394.716 kb on - strand, within ABZR87_RS01855at 394.716 kb on - strand, within ABZR87_RS01855at 394.716 kb on - strand, within ABZR87_RS01855at 394.749 kb on - strand, within ABZR87_RS01855at 394.988 kb on + strandat 395.558 kb on + strandat 395.605 kb on - strandat 395.676 kb on + strandat 395.676 kb on + strandat 395.676 kb on + strandat 395.676 kb on + strandat 395.676 kb on + strandat 395.676 kb on + strandat 395.676 kb on + strandat 395.676 kb on + strandat 395.676 kb on + strandat 395.676 kb on + strandat 395.676 kb on + strandat 395.677 kb on - strandat 395.677 kb on - strandat 395.719 kb on + strandat 395.719 kb on + strandat 395.720 kb on - strandat 395.720 kb on - strandat 395.720 kb on - strandat 395.762 kb on + strandat 395.762 kb on + strandat 395.762 kb on + strandat 395.763 kb on - strandat 395.768 kb on + strandat 395.770 kb on + strandat 396.136 kb on + strand, within ABZR87_RS01865at 396.136 kb on + strand, within ABZR87_RS01865at 396.136 kb on + strand, within ABZR87_RS01865at 396.137 kb on - strand, within ABZR87_RS01865at 396.137 kb on - strand, within ABZR87_RS01865at 396.161 kb on + strand, within ABZR87_RS01865at 396.162 kb on - strand, within ABZR87_RS01865at 396.304 kb on + strand, within ABZR87_RS01865at 396.305 kb on - strand, within ABZR87_RS01865at 396.317 kb on + strand, within ABZR87_RS01865at 396.318 kb on - strand, within ABZR87_RS01865at 396.318 kb on - strand, within ABZR87_RS01865at 396.318 kb on - strand, within ABZR87_RS01865at 396.318 kb on - strand, within ABZR87_RS01865at 396.345 kb on - strand, within ABZR87_RS01865at 396.360 kb on + strand, within ABZR87_RS01865at 396.360 kb on + strand, within ABZR87_RS01865at 396.361 kb on - strand, within ABZR87_RS01865at 396.413 kb on + strand, within ABZR87_RS01865at 396.413 kb on + strand, within ABZR87_RS01865at 396.413 kb on + strand, within ABZR87_RS01865at 396.413 kb on + strand, within ABZR87_RS01865at 396.413 kb on + strand, within ABZR87_RS01865at 396.413 kb on + strand, within ABZR87_RS01865at 396.413 kb on + strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.433 kb on + strand, within ABZR87_RS01865at 396.433 kb on + strand, within ABZR87_RS01865

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Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 2; outgrowth in LB
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394,074 + +1.6
394,074 + +2.1
394,074 + +2.0
394,074 + +0.7
394,074 + +2.0
394,074 + +1.9
394,075 - +1.0
394,075 - +1.2
394,075 - +1.9
394,075 - +0.7
394,075 - +1.4
394,075 - +0.2
394,075 - -1.7
394,075 - +2.1
394,259 + ABZR87_RS01855 0.17 +1.1
394,259 + ABZR87_RS01855 0.17 +2.3
394,259 + ABZR87_RS01855 0.17 +2.0
394,259 + ABZR87_RS01855 0.17 +2.2
394,259 + ABZR87_RS01855 0.17 +2.0
394,260 - ABZR87_RS01855 0.17 +2.1
394,260 - ABZR87_RS01855 0.17 +2.0
394,260 - ABZR87_RS01855 0.17 +2.9
394,260 - ABZR87_RS01855 0.17 +1.1
394,304 + ABZR87_RS01855 0.22 +2.2
394,304 + ABZR87_RS01855 0.22 -0.1
394,304 + ABZR87_RS01855 0.22 +2.3
394,304 + ABZR87_RS01855 0.22 +2.8
394,304 + ABZR87_RS01855 0.22 +2.4
394,304 + ABZR87_RS01855 0.22 +2.0
394,304 + ABZR87_RS01855 0.22 +1.9
394,304 + ABZR87_RS01855 0.22 +2.5
394,304 + ABZR87_RS01855 0.22 +2.7
394,304 + ABZR87_RS01855 0.22 +2.2
394,304 + ABZR87_RS01855 0.22 +1.7
394,305 - ABZR87_RS01855 0.22 +1.5
394,305 - ABZR87_RS01855 0.22 +1.7
394,305 - ABZR87_RS01855 0.22 +1.7
394,305 - ABZR87_RS01855 0.22 +1.7
394,305 - ABZR87_RS01855 0.22 +1.6
394,305 - ABZR87_RS01855 0.22 +2.2
394,305 - ABZR87_RS01855 0.22 +2.2
394,377 + ABZR87_RS01855 0.30 +1.7
394,377 + ABZR87_RS01855 0.30 +1.2
394,440 - ABZR87_RS01855 0.38 +2.4
394,485 + ABZR87_RS01855 0.43 +2.1
394,485 + ABZR87_RS01855 0.43 +1.7
394,486 - ABZR87_RS01855 0.43 +1.8
394,685 + ABZR87_RS01855 0.65 -0.3
394,686 - ABZR87_RS01855 0.65 +1.0
394,707 - ABZR87_RS01855 0.68 +1.4
394,707 - ABZR87_RS01855 0.68 +2.1
394,707 - ABZR87_RS01855 0.68 +2.6
394,715 + ABZR87_RS01855 0.69 +2.0
394,715 + ABZR87_RS01855 0.69 +2.1
394,716 - ABZR87_RS01855 0.69 +2.8
394,716 - ABZR87_RS01855 0.69 +1.3
394,716 - ABZR87_RS01855 0.69 +2.2
394,749 - ABZR87_RS01855 0.73 +2.0
394,988 + +0.5
395,558 + -3.2
395,605 - -1.2
395,676 + +0.5
395,676 + +0.8
395,676 + -1.0
395,676 + -0.2
395,676 + +0.5
395,676 + -0.1
395,676 + +0.1
395,676 + -0.6
395,676 + +0.8
395,676 + +0.2
395,676 + +0.1
395,677 - -2.6
395,677 - +0.5
395,719 + -0.5
395,719 + +0.9
395,720 - -0.0
395,720 - -0.7
395,720 - +0.4
395,762 + -0.2
395,762 + +0.5
395,762 + -0.8
395,763 - -3.0
395,768 + -0.4
395,770 + -2.1
396,136 + ABZR87_RS01865 0.50 +0.9
396,136 + ABZR87_RS01865 0.50 -1.4
396,136 + ABZR87_RS01865 0.50 +1.8
396,137 - ABZR87_RS01865 0.51 +0.1
396,137 - ABZR87_RS01865 0.51 -2.7
396,161 + ABZR87_RS01865 0.54 -0.1
396,162 - ABZR87_RS01865 0.54 -1.9
396,304 + ABZR87_RS01865 0.73 -0.4
396,305 - ABZR87_RS01865 0.73 +1.2
396,317 + ABZR87_RS01865 0.74 -1.3
396,318 - ABZR87_RS01865 0.74 +0.2
396,318 - ABZR87_RS01865 0.74 +1.0
396,318 - ABZR87_RS01865 0.74 -1.4
396,318 - ABZR87_RS01865 0.74 -1.1
396,345 - ABZR87_RS01865 0.78 -0.0
396,360 + ABZR87_RS01865 0.80 -0.4
396,360 + ABZR87_RS01865 0.80 -0.8
396,361 - ABZR87_RS01865 0.80 +0.8
396,413 + ABZR87_RS01865 0.87 -0.5
396,413 + ABZR87_RS01865 0.87 -0.3
396,413 + ABZR87_RS01865 0.87 +0.5
396,413 + ABZR87_RS01865 0.87 -0.5
396,413 + ABZR87_RS01865 0.87 +0.5
396,413 + ABZR87_RS01865 0.87 -1.2
396,413 + ABZR87_RS01865 0.87 -0.7
396,414 - ABZR87_RS01865 0.87 +0.8
396,414 - ABZR87_RS01865 0.87 -0.9
396,414 - ABZR87_RS01865 0.87 +0.4
396,414 - ABZR87_RS01865 0.87 -0.2
396,414 - ABZR87_RS01865 0.87 -0.6
396,414 - ABZR87_RS01865 0.87 +0.1
396,414 - ABZR87_RS01865 0.87 +0.7
396,414 - ABZR87_RS01865 0.87 +1.7
396,414 - ABZR87_RS01865 0.87 +0.0
396,414 - ABZR87_RS01865 0.87 -0.7
396,414 - ABZR87_RS01865 0.87 +0.7
396,414 - ABZR87_RS01865 0.87 -0.4
396,414 - ABZR87_RS01865 0.87 -2.1
396,414 - ABZR87_RS01865 0.87 +2.0
396,433 + ABZR87_RS01865 0.90 +0.2
396,433 + ABZR87_RS01865 0.90 -1.7

Or see this region's nucleotide sequence