Experiment: soil EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01160 and ABZR87_RS01165 are separated by 171 nucleotides ABZR87_RS01165 and ABZR87_RS01170 are separated by 67 nucleotides ABZR87_RS01170 and ABZR87_RS01175 are separated by 43 nucleotides ABZR87_RS01175 and ABZR87_RS01180 are separated by 24 nucleotides
ABZR87_RS01160: ABZR87_RS01160 - LrgB family protein, at 241,212 to 241,943
_RS01160
ABZR87_RS01165: ABZR87_RS01165 - VOC family protein, at 242,115 to 242,510
_RS01165
ABZR87_RS01170: ABZR87_RS01170 - cupin domain-containing protein, at 242,578 to 243,057
_RS01170
ABZR87_RS01175: ABZR87_RS01175 - YafY family protein, at 243,101 to 243,799
_RS01175
ABZR87_RS01180: ABZR87_RS01180 - glutathione peroxidase, at 243,824 to 244,321
_RS01180
Position (kb) 242
243
244 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 241.776 kb on + strand, within ABZR87_RS01160 at 241.776 kb on + strand, within ABZR87_RS01160 at 241.824 kb on - strand, within ABZR87_RS01160 at 241.970 kb on + strand at 242.322 kb on + strand, within ABZR87_RS01165 at 242.323 kb on - strand, within ABZR87_RS01165 at 242.493 kb on + strand at 242.493 kb on + strand at 242.494 kb on - strand at 242.494 kb on - strand at 242.508 kb on + strand at 242.509 kb on - strand at 242.509 kb on - strand at 242.509 kb on - strand at 242.511 kb on + strand at 242.511 kb on + strand at 242.511 kb on + strand at 242.512 kb on - strand at 242.512 kb on - strand at 242.517 kb on + strand at 242.597 kb on - strand at 242.759 kb on - strand, within ABZR87_RS01170 at 242.791 kb on + strand, within ABZR87_RS01170 at 242.791 kb on + strand, within ABZR87_RS01170 at 242.791 kb on + strand, within ABZR87_RS01170 at 242.792 kb on - strand, within ABZR87_RS01170 at 242.792 kb on - strand, within ABZR87_RS01170 at 242.792 kb on - strand, within ABZR87_RS01170 at 242.792 kb on - strand, within ABZR87_RS01170 at 242.792 kb on - strand, within ABZR87_RS01170 at 242.792 kb on - strand, within ABZR87_RS01170 at 242.792 kb on - strand, within ABZR87_RS01170 at 242.792 kb on - strand, within ABZR87_RS01170 at 242.920 kb on + strand, within ABZR87_RS01170 at 242.920 kb on + strand, within ABZR87_RS01170 at 242.921 kb on - strand, within ABZR87_RS01170 at 243.097 kb on + strand at 243.221 kb on + strand, within ABZR87_RS01175 at 243.221 kb on + strand, within ABZR87_RS01175 at 243.222 kb on - strand, within ABZR87_RS01175 at 243.222 kb on - strand, within ABZR87_RS01175 at 243.230 kb on - strand, within ABZR87_RS01175 at 243.303 kb on - strand, within ABZR87_RS01175 at 243.492 kb on - strand, within ABZR87_RS01175 at 243.526 kb on + strand, within ABZR87_RS01175 at 243.527 kb on - strand, within ABZR87_RS01175 at 243.680 kb on + strand, within ABZR87_RS01175 at 243.680 kb on + strand, within ABZR87_RS01175 at 243.680 kb on + strand, within ABZR87_RS01175 at 243.681 kb on - strand, within ABZR87_RS01175 at 243.681 kb on - strand, within ABZR87_RS01175 at 243.797 kb on + strand at 243.797 kb on + strand at 243.798 kb on - strand at 243.798 kb on - strand at 243.906 kb on + strand, within ABZR87_RS01180 at 243.907 kb on - strand, within ABZR87_RS01180 at 243.907 kb on - strand, within ABZR87_RS01180
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 2; outgrowth in LB remove 241,776 + ABZR87_RS01160 0.77 +0.3 241,776 + ABZR87_RS01160 0.77 +0.4 241,824 - ABZR87_RS01160 0.84 +0.8 241,970 + -0.2 242,322 + ABZR87_RS01165 0.52 +0.3 242,323 - ABZR87_RS01165 0.53 +0.7 242,493 + -2.9 242,493 + -0.7 242,494 - -0.9 242,494 - -1.7 242,508 + -3.2 242,509 - -0.6 242,509 - +1.1 242,509 - -1.2 242,511 + -0.0 242,511 + -0.3 242,511 + +1.3 242,512 - +2.1 242,512 - +0.2 242,517 + +0.9 242,597 - +0.3 242,759 - ABZR87_RS01170 0.38 -1.6 242,791 + ABZR87_RS01170 0.44 -0.2 242,791 + ABZR87_RS01170 0.44 -2.0 242,791 + ABZR87_RS01170 0.44 -0.4 242,792 - ABZR87_RS01170 0.45 -0.7 242,792 - ABZR87_RS01170 0.45 -0.7 242,792 - ABZR87_RS01170 0.45 -0.6 242,792 - ABZR87_RS01170 0.45 -0.1 242,792 - ABZR87_RS01170 0.45 +0.2 242,792 - ABZR87_RS01170 0.45 +0.0 242,792 - ABZR87_RS01170 0.45 -1.1 242,792 - ABZR87_RS01170 0.45 -0.2 242,920 + ABZR87_RS01170 0.71 +0.8 242,920 + ABZR87_RS01170 0.71 -0.4 242,921 - ABZR87_RS01170 0.71 -0.2 243,097 + +1.6 243,221 + ABZR87_RS01175 0.17 -0.8 243,221 + ABZR87_RS01175 0.17 +0.2 243,222 - ABZR87_RS01175 0.17 +0.8 243,222 - ABZR87_RS01175 0.17 +1.0 243,230 - ABZR87_RS01175 0.18 -2.3 243,303 - ABZR87_RS01175 0.29 -2.3 243,492 - ABZR87_RS01175 0.56 -0.4 243,526 + ABZR87_RS01175 0.61 +1.9 243,527 - ABZR87_RS01175 0.61 -2.6 243,680 + ABZR87_RS01175 0.83 +2.7 243,680 + ABZR87_RS01175 0.83 +0.7 243,680 + ABZR87_RS01175 0.83 -2.4 243,681 - ABZR87_RS01175 0.83 -1.2 243,681 - ABZR87_RS01175 0.83 +1.1 243,797 + -0.0 243,797 + -0.0 243,798 - +0.8 243,798 - +0.3 243,906 + ABZR87_RS01180 0.16 -0.2 243,907 - ABZR87_RS01180 0.17 -0.0 243,907 - ABZR87_RS01180 0.17 +1.4
Or see this region's nucleotide sequence