Experiment: Cholin acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0677 and Shew_0678 are separated by 195 nucleotides Shew_0678 and Shew_0679 are separated by 64 nucleotides Shew_0679 and Shew_0680 are separated by 87 nucleotides
Shew_0677: Shew_0677 - hypothetical protein (RefSeq), at 771,168 to 772,799
_0677
Shew_0678: Shew_0678 - protoporphyrinogen oxidase (RefSeq), at 772,995 to 773,516
_0678
Shew_0679: Shew_0679 - hypothetical protein (RefSeq), at 773,581 to 774,105
_0679
Shew_0680: Shew_0680 - LysR family transcriptional regulator (RefSeq), at 774,193 to 775,065
_0680
Position (kb) 773
774
775 Strain fitness (log2 ratio) -1
0
1 at 772.719 kb on + strand at 772.724 kb on + strand at 772.727 kb on - strand at 772.732 kb on - strand at 772.754 kb on - strand at 772.754 kb on - strand at 772.761 kb on - strand at 773.038 kb on + strand at 773.046 kb on - strand at 773.046 kb on - strand at 773.046 kb on - strand at 773.046 kb on - strand at 773.046 kb on - strand at 773.262 kb on - strand, within Shew_0678 at 773.262 kb on - strand, within Shew_0678 at 773.486 kb on + strand at 773.577 kb on - strand at 774.011 kb on + strand, within Shew_0679 at 774.011 kb on + strand, within Shew_0679 at 774.110 kb on + strand at 774.140 kb on - strand at 774.141 kb on - strand at 774.143 kb on + strand at 774.238 kb on + strand at 774.529 kb on + strand, within Shew_0680 at 774.613 kb on - strand, within Shew_0680 at 774.699 kb on + strand, within Shew_0680 at 774.755 kb on + strand, within Shew_0680
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 20 mM remove 772,719 + -0.1 772,724 + -0.1 772,727 - +0.6 772,732 - +0.0 772,754 - +0.1 772,754 - +0.0 772,761 - +0.0 773,038 + +0.2 773,046 - -0.1 773,046 - -0.1 773,046 - -0.5 773,046 - +0.2 773,046 - -0.2 773,262 - Shew_0678 0.51 +0.1 773,262 - Shew_0678 0.51 -0.2 773,486 + -0.1 773,577 - +0.3 774,011 + Shew_0679 0.82 -1.1 774,011 + Shew_0679 0.82 -0.0 774,110 + +0.1 774,140 - -0.2 774,141 - -0.3 774,143 + +0.1 774,238 + -0.1 774,529 + Shew_0680 0.38 -0.5 774,613 - Shew_0680 0.48 -0.1 774,699 + Shew_0680 0.58 -0.0 774,755 + Shew_0680 0.64 -0.2
Or see this region's nucleotide sequence