Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4192

Experiment: m.b. Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4191 and Dshi_4192 are separated by 92 nucleotidesDshi_4192 and Dshi_4193 overlap by 4 nucleotides Dshi_4191: Dshi_4191 - TRAP dicarboxylate transporter, DctP subunit (RefSeq), at 37,297 to 38,292 _4191 Dshi_4192: Dshi_4192 - Tripartite ATP-independent periplasmic transporter DctQ component (RefSeq), at 38,385 to 38,972 _4192 Dshi_4193: Dshi_4193 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 38,969 to 40,258 _4193 Position (kb) 38 39Strain fitness (log2 ratio) -1 0 1at 37.574 kb on + strand, within Dshi_4191at 37.676 kb on + strand, within Dshi_4191at 37.782 kb on - strand, within Dshi_4191at 37.898 kb on + strand, within Dshi_4191at 38.008 kb on + strand, within Dshi_4191at 38.041 kb on - strand, within Dshi_4191at 38.059 kb on - strand, within Dshi_4191at 38.066 kb on + strand, within Dshi_4191at 38.401 kb on - strandat 38.849 kb on + strand, within Dshi_4192at 38.849 kb on + strand, within Dshi_4192at 38.857 kb on - strand, within Dshi_4192at 38.898 kb on + strand, within Dshi_4192at 39.196 kb on - strand, within Dshi_4193at 39.257 kb on + strand, within Dshi_4193at 39.448 kb on + strand, within Dshi_4193at 39.721 kb on - strand, within Dshi_4193at 39.915 kb on - strand, within Dshi_4193

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
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37,574 + Dshi_4191 0.28 -1.0
37,676 + Dshi_4191 0.38 -1.3
37,782 - Dshi_4191 0.49 +0.4
37,898 + Dshi_4191 0.60 -1.5
38,008 + Dshi_4191 0.71 +0.2
38,041 - Dshi_4191 0.75 -0.4
38,059 - Dshi_4191 0.77 +0.3
38,066 + Dshi_4191 0.77 +0.1
38,401 - +1.7
38,849 + Dshi_4192 0.79 -1.1
38,849 + Dshi_4192 0.79 -0.8
38,857 - Dshi_4192 0.80 -1.1
38,898 + Dshi_4192 0.87 -0.5
39,196 - Dshi_4193 0.18 -0.7
39,257 + Dshi_4193 0.22 +0.1
39,448 + Dshi_4193 0.37 +0.5
39,721 - Dshi_4193 0.58 +0.0
39,915 - Dshi_4193 0.73 -0.5

Or see this region's nucleotide sequence