Experiment: m.b. Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4115 and Dshi_4116 are separated by 3 nucleotides Dshi_4116 and Dshi_4117 overlap by 4 nucleotides Dshi_4117 and Dshi_4118 are separated by 34 nucleotides
Dshi_4115: Dshi_4115 - dTDP-glucose 4,6-dehydratase (RefSeq), at 46,978 to 48,018
_4115
Dshi_4116: Dshi_4116 - hypothetical protein (RefSeq), at 48,022 to 48,855
_4116
Dshi_4117: Dshi_4117 - dTDP-4-dehydrorhamnose reductase (RefSeq), at 48,852 to 49,709
_4117
Dshi_4118: Dshi_4118 - glucose-1-phosphate thymidylyltransferase (RefSeq), at 49,744 to 50,616
_4118
Position (kb)
48
49 Strain fitness (log2 ratio)
-1
0
1
2
3 at 47.071 kb on + strand at 47.312 kb on + strand, within Dshi_4115 at 47.312 kb on + strand, within Dshi_4115 at 47.312 kb on + strand, within Dshi_4115 at 47.320 kb on - strand, within Dshi_4115 at 47.406 kb on - strand, within Dshi_4115 at 47.548 kb on - strand, within Dshi_4115 at 47.584 kb on - strand, within Dshi_4115 at 47.584 kb on - strand, within Dshi_4115 at 47.607 kb on + strand, within Dshi_4115 at 47.670 kb on + strand, within Dshi_4115 at 47.757 kb on - strand, within Dshi_4115 at 47.796 kb on + strand, within Dshi_4115 at 47.979 kb on - strand at 48.194 kb on + strand, within Dshi_4116 at 48.296 kb on - strand, within Dshi_4116 at 48.427 kb on + strand, within Dshi_4116 at 48.526 kb on + strand, within Dshi_4116 at 48.592 kb on + strand, within Dshi_4116 at 48.627 kb on + strand, within Dshi_4116 at 48.879 kb on - strand at 49.199 kb on + strand, within Dshi_4117 at 49.279 kb on + strand, within Dshi_4117 at 49.350 kb on + strand, within Dshi_4117 at 49.485 kb on + strand, within Dshi_4117 at 49.791 kb on + strand at 49.799 kb on - strand at 49.834 kb on + strand, within Dshi_4118
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml remove 47,071 + -0.4 47,312 + Dshi_4115 0.32 +0.1 47,312 + Dshi_4115 0.32 +1.3 47,312 + Dshi_4115 0.32 +0.6 47,320 - Dshi_4115 0.33 -0.5 47,406 - Dshi_4115 0.41 +1.8 47,548 - Dshi_4115 0.55 +0.4 47,584 - Dshi_4115 0.58 +0.4 47,584 - Dshi_4115 0.58 -1.1 47,607 + Dshi_4115 0.60 -0.1 47,670 + Dshi_4115 0.66 +0.7 47,757 - Dshi_4115 0.75 +0.9 47,796 + Dshi_4115 0.79 -1.7 47,979 - -1.7 48,194 + Dshi_4116 0.21 -0.3 48,296 - Dshi_4116 0.33 +0.3 48,427 + Dshi_4116 0.49 +0.5 48,526 + Dshi_4116 0.60 -0.5 48,592 + Dshi_4116 0.68 +0.6 48,627 + Dshi_4116 0.73 -0.7 48,879 - +0.3 49,199 + Dshi_4117 0.40 -0.1 49,279 + Dshi_4117 0.50 -1.7 49,350 + Dshi_4117 0.58 +1.5 49,485 + Dshi_4117 0.74 +0.1 49,791 + +3.0 49,799 - -0.4 49,834 + Dshi_4118 0.10 -0.1
Or see this region's nucleotide sequence