Experiment: m.b. Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3799 and Dshi_3800 are separated by 4 nucleotides Dshi_3800 and Dshi_3801 are separated by 58 nucleotides Dshi_3801 and Dshi_3802 are separated by 113 nucleotides
Dshi_3799: Dshi_3799 - HupE/UreJ protein (RefSeq), at 7,084 to 7,680
_3799
Dshi_3800: Dshi_3800 - hypothetical protein (RefSeq), at 7,685 to 8,299
_3800
Dshi_3801: Dshi_3801 - catalase/peroxidase HPI (RefSeq), at 8,358 to 10,535
_3801
Dshi_3802: Dshi_3802 - transcriptional regulator, LysR family (RefSeq), at 10,649 to 11,578
_3802
Position (kb)
8
9
10
11 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 7.393 kb on + strand, within Dshi_3799 at 7.633 kb on - strand at 7.690 kb on - strand at 7.874 kb on - strand, within Dshi_3800 at 8.039 kb on + strand, within Dshi_3800 at 8.043 kb on + strand, within Dshi_3800 at 8.238 kb on - strand at 8.377 kb on - strand at 8.457 kb on - strand at 8.515 kb on + strand at 8.599 kb on - strand, within Dshi_3801 at 8.612 kb on + strand, within Dshi_3801 at 8.890 kb on + strand, within Dshi_3801 at 9.092 kb on + strand, within Dshi_3801 at 9.100 kb on - strand, within Dshi_3801 at 9.100 kb on - strand, within Dshi_3801 at 9.169 kb on + strand, within Dshi_3801 at 9.169 kb on + strand, within Dshi_3801 at 9.229 kb on - strand, within Dshi_3801 at 9.234 kb on - strand, within Dshi_3801 at 9.264 kb on - strand, within Dshi_3801 at 9.421 kb on - strand, within Dshi_3801 at 9.502 kb on + strand, within Dshi_3801 at 9.537 kb on - strand, within Dshi_3801 at 9.572 kb on + strand, within Dshi_3801 at 9.579 kb on + strand, within Dshi_3801 at 9.613 kb on + strand, within Dshi_3801 at 9.755 kb on - strand, within Dshi_3801 at 9.814 kb on + strand, within Dshi_3801 at 9.843 kb on - strand, within Dshi_3801 at 9.845 kb on - strand, within Dshi_3801 at 9.861 kb on + strand, within Dshi_3801 at 9.861 kb on + strand at 9.861 kb on + strand, within Dshi_3801 at 9.864 kb on - strand, within Dshi_3801 at 9.869 kb on - strand, within Dshi_3801 at 10.114 kb on + strand, within Dshi_3801 at 10.164 kb on - strand, within Dshi_3801 at 10.167 kb on - strand, within Dshi_3801 at 10.185 kb on - strand, within Dshi_3801 at 10.264 kb on + strand, within Dshi_3801 at 10.270 kb on - strand, within Dshi_3801 at 10.272 kb on - strand, within Dshi_3801 at 10.414 kb on - strand at 10.415 kb on + strand at 10.547 kb on - strand at 10.585 kb on + strand at 10.589 kb on - strand at 10.670 kb on - strand at 10.678 kb on - strand at 10.696 kb on - strand at 10.799 kb on + strand, within Dshi_3802 at 10.833 kb on + strand, within Dshi_3802 at 10.975 kb on + strand, within Dshi_3802 at 10.992 kb on + strand, within Dshi_3802 at 11.090 kb on + strand, within Dshi_3802 at 11.205 kb on + strand, within Dshi_3802 at 11.223 kb on - strand, within Dshi_3802 at 11.260 kb on + strand, within Dshi_3802 at 11.269 kb on - strand, within Dshi_3802 at 11.321 kb on + strand, within Dshi_3802 at 11.329 kb on - strand, within Dshi_3802 at 11.358 kb on - strand, within Dshi_3802 at 11.397 kb on - strand, within Dshi_3802 at 11.516 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml remove 7,393 + Dshi_3799 0.52 -0.1 7,633 - +0.1 7,690 - +0.7 7,874 - Dshi_3800 0.31 -1.7 8,039 + Dshi_3800 0.58 -1.0 8,043 + Dshi_3800 0.58 -1.3 8,238 - -1.5 8,377 - -1.4 8,457 - -0.1 8,515 + -0.1 8,599 - Dshi_3801 0.11 -0.3 8,612 + Dshi_3801 0.12 +0.3 8,890 + Dshi_3801 0.24 -0.3 9,092 + Dshi_3801 0.34 +0.7 9,100 - Dshi_3801 0.34 +1.1 9,100 - Dshi_3801 0.34 +0.2 9,169 + Dshi_3801 0.37 -0.6 9,169 + Dshi_3801 0.37 +0.2 9,229 - Dshi_3801 0.40 -0.1 9,234 - Dshi_3801 0.40 -0.7 9,264 - Dshi_3801 0.42 +0.3 9,421 - Dshi_3801 0.49 -0.4 9,502 + Dshi_3801 0.53 +0.3 9,537 - Dshi_3801 0.54 -0.1 9,572 + Dshi_3801 0.56 -0.9 9,579 + Dshi_3801 0.56 +0.6 9,613 + Dshi_3801 0.58 +0.2 9,755 - Dshi_3801 0.64 +0.1 9,814 + Dshi_3801 0.67 -0.4 9,843 - Dshi_3801 0.68 -0.7 9,845 - Dshi_3801 0.68 +1.8 9,861 + Dshi_3801 0.69 -1.1 9,861 + -0.1 9,861 + Dshi_3801 0.69 +0.1 9,864 - Dshi_3801 0.69 +1.2 9,869 - Dshi_3801 0.69 -2.8 10,114 + Dshi_3801 0.81 -0.3 10,164 - Dshi_3801 0.83 -0.3 10,167 - Dshi_3801 0.83 +1.0 10,185 - Dshi_3801 0.84 +0.5 10,264 + Dshi_3801 0.88 +1.1 10,270 - Dshi_3801 0.88 +0.9 10,272 - Dshi_3801 0.88 -0.0 10,414 - -0.5 10,415 + +1.2 10,547 - -0.4 10,585 + +0.6 10,589 - +0.9 10,670 - +0.4 10,678 - +0.3 10,696 - -0.1 10,799 + Dshi_3802 0.16 -0.3 10,833 + Dshi_3802 0.20 -0.5 10,975 + Dshi_3802 0.35 +1.0 10,992 + Dshi_3802 0.37 -0.4 11,090 + Dshi_3802 0.47 -0.9 11,205 + Dshi_3802 0.60 +0.6 11,223 - Dshi_3802 0.62 +0.1 11,260 + Dshi_3802 0.66 -1.3 11,269 - Dshi_3802 0.67 -0.9 11,321 + Dshi_3802 0.72 -1.2 11,329 - Dshi_3802 0.73 -1.0 11,358 - Dshi_3802 0.76 -0.8 11,397 - Dshi_3802 0.80 -0.4 11,516 - -0.2
Or see this region's nucleotide sequence