Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3464

Experiment: m.b. Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3462 and Dshi_3463 overlap by 1 nucleotidesDshi_3463 and Dshi_3464 are separated by 135 nucleotidesDshi_3464 and Dshi_3465 are separated by 12 nucleotidesDshi_3465 and Dshi_3466 are separated by 33 nucleotides Dshi_3462: Dshi_3462 - Ham1 family protein (RefSeq), at 3,642,968 to 3,643,582 _3462 Dshi_3463: Dshi_3463 - ribonuclease PH (RefSeq), at 3,643,582 to 3,644,295 _3463 Dshi_3464: Dshi_3464 - heat-inducible transcription repressor HrcA (RefSeq), at 3,644,431 to 3,645,495 _3464 Dshi_3465: Dshi_3465 - GrpE protein (RefSeq), at 3,645,508 to 3,646,101 _3465 Dshi_3466: Dshi_3466 - DNA mismatch repair protein MutS (RefSeq), at 3,646,135 to 3,648,768 _3466 Position (kb) 3644 3645 3646Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3643.466 kb on - strand, within Dshi_3462at 3643.466 kb on - strand, within Dshi_3462at 3643.479 kb on + strand, within Dshi_3462at 3643.492 kb on + strand, within Dshi_3462at 3643.494 kb on + strand, within Dshi_3462at 3643.561 kb on - strandat 3643.802 kb on + strand, within Dshi_3463at 3643.802 kb on + strand, within Dshi_3463at 3643.810 kb on - strand, within Dshi_3463at 3643.810 kb on - strand, within Dshi_3463at 3643.890 kb on - strand, within Dshi_3463at 3643.892 kb on + strand, within Dshi_3463at 3643.972 kb on + strand, within Dshi_3463at 3644.028 kb on + strand, within Dshi_3463at 3644.039 kb on - strand, within Dshi_3463at 3644.043 kb on - strand, within Dshi_3463at 3644.085 kb on + strand, within Dshi_3463at 3644.088 kb on - strand, within Dshi_3463at 3644.088 kb on - strand, within Dshi_3463at 3644.093 kb on - strand, within Dshi_3463at 3644.133 kb on - strand, within Dshi_3463at 3644.135 kb on + strand, within Dshi_3463at 3644.171 kb on - strand, within Dshi_3463at 3644.171 kb on - strand, within Dshi_3463at 3644.171 kb on - strand, within Dshi_3463at 3644.171 kb on - strand, within Dshi_3463at 3644.171 kb on - strand, within Dshi_3463at 3644.182 kb on - strand, within Dshi_3463at 3644.219 kb on + strand, within Dshi_3463at 3644.238 kb on + strandat 3644.241 kb on - strandat 3644.258 kb on + strandat 3644.265 kb on + strandat 3644.271 kb on - strandat 3644.273 kb on - strandat 3644.273 kb on - strandat 3644.391 kb on + strandat 3644.399 kb on - strandat 3644.399 kb on - strandat 3644.399 kb on - strandat 3644.406 kb on - strandat 3644.413 kb on + strandat 3644.421 kb on - strandat 3644.421 kb on - strandat 3644.421 kb on - strandat 3644.435 kb on - strandat 3644.448 kb on + strandat 3644.453 kb on + strandat 3644.456 kb on - strandat 3644.456 kb on - strandat 3644.482 kb on + strandat 3644.497 kb on + strandat 3644.500 kb on - strandat 3644.535 kb on - strandat 3644.539 kb on + strand, within Dshi_3464at 3644.550 kb on + strand, within Dshi_3464at 3644.558 kb on - strand, within Dshi_3464at 3644.583 kb on - strand, within Dshi_3464at 3644.653 kb on - strand, within Dshi_3464at 3644.709 kb on + strand, within Dshi_3464at 3644.717 kb on - strand, within Dshi_3464at 3644.720 kb on + strand, within Dshi_3464at 3644.772 kb on + strand, within Dshi_3464at 3644.781 kb on + strand, within Dshi_3464at 3644.786 kb on + strand, within Dshi_3464at 3644.791 kb on + strand, within Dshi_3464at 3644.794 kb on - strand, within Dshi_3464at 3644.796 kb on + strand, within Dshi_3464at 3644.819 kb on + strand, within Dshi_3464at 3644.819 kb on + strand, within Dshi_3464at 3644.819 kb on + strand, within Dshi_3464at 3644.819 kb on + strand, within Dshi_3464at 3644.827 kb on - strand, within Dshi_3464at 3644.838 kb on + strand, within Dshi_3464at 3644.856 kb on - strand, within Dshi_3464at 3644.876 kb on + strand, within Dshi_3464at 3644.884 kb on - strand, within Dshi_3464at 3644.884 kb on - strand, within Dshi_3464at 3644.889 kb on - strand, within Dshi_3464at 3644.892 kb on + strand, within Dshi_3464at 3644.892 kb on + strand, within Dshi_3464at 3644.892 kb on + strand, within Dshi_3464at 3644.893 kb on + strand, within Dshi_3464at 3644.900 kb on - strand, within Dshi_3464at 3644.900 kb on - strand, within Dshi_3464at 3644.900 kb on - strand, within Dshi_3464at 3644.900 kb on - strand, within Dshi_3464at 3644.934 kb on - strand, within Dshi_3464at 3644.956 kb on + strand, within Dshi_3464at 3645.002 kb on - strand, within Dshi_3464at 3645.010 kb on - strand, within Dshi_3464at 3645.014 kb on + strand, within Dshi_3464at 3645.058 kb on + strand, within Dshi_3464at 3645.064 kb on + strand, within Dshi_3464at 3645.100 kb on + strand, within Dshi_3464at 3645.107 kb on - strand, within Dshi_3464at 3645.203 kb on + strand, within Dshi_3464at 3645.204 kb on + strand, within Dshi_3464at 3645.267 kb on - strand, within Dshi_3464at 3645.271 kb on - strand, within Dshi_3464at 3645.271 kb on - strand, within Dshi_3464at 3645.273 kb on + strand, within Dshi_3464at 3645.273 kb on + strand, within Dshi_3464at 3645.281 kb on - strand, within Dshi_3464at 3645.282 kb on + strand, within Dshi_3464at 3645.292 kb on - strand, within Dshi_3464at 3645.292 kb on - strand, within Dshi_3464at 3645.373 kb on + strand, within Dshi_3464at 3645.415 kb on + strandat 3645.474 kb on + strandat 3645.474 kb on + strandat 3645.474 kb on + strandat 3646.085 kb on - strandat 3646.127 kb on - strandat 3646.369 kb on + strandat 3646.415 kb on + strand, within Dshi_3466

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
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3,643,466 - Dshi_3462 0.81 +0.1
3,643,466 - Dshi_3462 0.81 -0.8
3,643,479 + Dshi_3462 0.83 +0.5
3,643,492 + Dshi_3462 0.85 -0.7
3,643,494 + Dshi_3462 0.86 +0.1
3,643,561 - +0.6
3,643,802 + Dshi_3463 0.31 +0.9
3,643,802 + Dshi_3463 0.31 -0.9
3,643,810 - Dshi_3463 0.32 -0.1
3,643,810 - Dshi_3463 0.32 -1.0
3,643,890 - Dshi_3463 0.43 -0.1
3,643,892 + Dshi_3463 0.43 -2.0
3,643,972 + Dshi_3463 0.55 -0.4
3,644,028 + Dshi_3463 0.62 -0.2
3,644,039 - Dshi_3463 0.64 -0.9
3,644,043 - Dshi_3463 0.65 -0.1
3,644,085 + Dshi_3463 0.70 +0.2
3,644,088 - Dshi_3463 0.71 +1.9
3,644,088 - Dshi_3463 0.71 -1.4
3,644,093 - Dshi_3463 0.72 +1.1
3,644,133 - Dshi_3463 0.77 +0.9
3,644,135 + Dshi_3463 0.77 +0.9
3,644,171 - Dshi_3463 0.82 +1.7
3,644,171 - Dshi_3463 0.82 +0.5
3,644,171 - Dshi_3463 0.82 -0.2
3,644,171 - Dshi_3463 0.82 -2.1
3,644,171 - Dshi_3463 0.82 -0.3
3,644,182 - Dshi_3463 0.84 -0.5
3,644,219 + Dshi_3463 0.89 +0.1
3,644,238 + +0.0
3,644,241 - -0.9
3,644,258 + +0.5
3,644,265 + -0.5
3,644,271 - -1.1
3,644,273 - +0.7
3,644,273 - +0.7
3,644,391 + -1.3
3,644,399 - -0.1
3,644,399 - +0.4
3,644,399 - -0.3
3,644,406 - -0.1
3,644,413 + -1.1
3,644,421 - -0.3
3,644,421 - -0.6
3,644,421 - -1.5
3,644,435 - +0.2
3,644,448 + -1.0
3,644,453 + -0.1
3,644,456 - -0.4
3,644,456 - -3.3
3,644,482 + -0.1
3,644,497 + -2.1
3,644,500 - -1.1
3,644,535 - -0.9
3,644,539 + Dshi_3464 0.10 -0.2
3,644,550 + Dshi_3464 0.11 -1.0
3,644,558 - Dshi_3464 0.12 +0.5
3,644,583 - Dshi_3464 0.14 -0.7
3,644,653 - Dshi_3464 0.21 -0.6
3,644,709 + Dshi_3464 0.26 -0.7
3,644,717 - Dshi_3464 0.27 -1.1
3,644,720 + Dshi_3464 0.27 +0.2
3,644,772 + Dshi_3464 0.32 -0.1
3,644,781 + Dshi_3464 0.33 +0.2
3,644,786 + Dshi_3464 0.33 +0.3
3,644,791 + Dshi_3464 0.34 +0.7
3,644,794 - Dshi_3464 0.34 +0.3
3,644,796 + Dshi_3464 0.34 -1.6
3,644,819 + Dshi_3464 0.36 +0.5
3,644,819 + Dshi_3464 0.36 +0.2
3,644,819 + Dshi_3464 0.36 +0.1
3,644,819 + Dshi_3464 0.36 -0.6
3,644,827 - Dshi_3464 0.37 +0.6
3,644,838 + Dshi_3464 0.38 -0.1
3,644,856 - Dshi_3464 0.40 -0.7
3,644,876 + Dshi_3464 0.42 +0.2
3,644,884 - Dshi_3464 0.43 -0.8
3,644,884 - Dshi_3464 0.43 +0.9
3,644,889 - Dshi_3464 0.43 -0.7
3,644,892 + Dshi_3464 0.43 -0.6
3,644,892 + Dshi_3464 0.43 -0.1
3,644,892 + Dshi_3464 0.43 -1.7
3,644,893 + Dshi_3464 0.43 +1.1
3,644,900 - Dshi_3464 0.44 -1.1
3,644,900 - Dshi_3464 0.44 -0.1
3,644,900 - Dshi_3464 0.44 -0.0
3,644,900 - Dshi_3464 0.44 -0.3
3,644,934 - Dshi_3464 0.47 +0.2
3,644,956 + Dshi_3464 0.49 -1.3
3,645,002 - Dshi_3464 0.54 +1.1
3,645,010 - Dshi_3464 0.54 -0.3
3,645,014 + Dshi_3464 0.55 -0.2
3,645,058 + Dshi_3464 0.59 -0.5
3,645,064 + Dshi_3464 0.59 -1.0
3,645,100 + Dshi_3464 0.63 -0.3
3,645,107 - Dshi_3464 0.63 -1.1
3,645,203 + Dshi_3464 0.72 +0.4
3,645,204 + Dshi_3464 0.73 +1.1
3,645,267 - Dshi_3464 0.78 +1.2
3,645,271 - Dshi_3464 0.79 -0.2
3,645,271 - Dshi_3464 0.79 +0.3
3,645,273 + Dshi_3464 0.79 +2.2
3,645,273 + Dshi_3464 0.79 -1.4
3,645,281 - Dshi_3464 0.80 -0.7
3,645,282 + Dshi_3464 0.80 +0.3
3,645,292 - Dshi_3464 0.81 +1.9
3,645,292 - Dshi_3464 0.81 +0.5
3,645,373 + Dshi_3464 0.88 +1.6
3,645,415 + +0.9
3,645,474 + +1.4
3,645,474 + +1.1
3,645,474 + +0.4
3,646,085 - +1.1
3,646,127 - -0.1
3,646,369 + -1.0
3,646,415 + Dshi_3466 0.11 -0.1

Or see this region's nucleotide sequence