Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3459

Experiment: m.b. Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3457 and Dshi_3458 are separated by 17 nucleotidesDshi_3458 and Dshi_3459 overlap by 4 nucleotidesDshi_3459 and Dshi_3460 overlap by 4 nucleotides Dshi_3457: Dshi_3457 - Cobyrinic acid ac-diamide synthase (RefSeq), at 3,639,355 to 3,640,161 _3457 Dshi_3458: Dshi_3458 - parB-like partition protein (RefSeq), at 3,640,179 to 3,641,078 _3458 Dshi_3459: Dshi_3459 - protein of unknown function DUF454 (RefSeq), at 3,641,075 to 3,641,428 _3459 Dshi_3460: Dshi_3460 - putative oxygen-independent coproporphyrinogen III oxidase (RefSeq), at 3,641,425 to 3,642,588 _3460 Position (kb) 3641 3642Strain fitness (log2 ratio) -2 -1 0 1 2at 3641.079 kb on - strandat 3641.079 kb on - strandat 3641.112 kb on + strand, within Dshi_3459at 3641.117 kb on + strand, within Dshi_3459at 3641.125 kb on - strand, within Dshi_3459at 3641.209 kb on - strand, within Dshi_3459at 3641.469 kb on - strandat 3641.618 kb on - strand, within Dshi_3460at 3641.652 kb on - strand, within Dshi_3460at 3641.711 kb on + strand, within Dshi_3460at 3641.711 kb on + strand, within Dshi_3460at 3641.735 kb on - strand, within Dshi_3460at 3641.764 kb on + strand, within Dshi_3460at 3641.839 kb on + strand, within Dshi_3460at 3641.839 kb on + strand, within Dshi_3460at 3641.841 kb on + strand, within Dshi_3460at 3641.956 kb on + strand, within Dshi_3460at 3641.957 kb on + strand, within Dshi_3460at 3641.964 kb on - strand, within Dshi_3460at 3641.981 kb on - strand, within Dshi_3460at 3641.991 kb on + strand, within Dshi_3460at 3642.044 kb on + strand, within Dshi_3460at 3642.044 kb on + strand, within Dshi_3460at 3642.044 kb on + strand, within Dshi_3460at 3642.044 kb on + strand, within Dshi_3460at 3642.044 kb on + strand, within Dshi_3460at 3642.044 kb on + strand, within Dshi_3460at 3642.044 kb on + strand, within Dshi_3460at 3642.052 kb on - strand, within Dshi_3460at 3642.052 kb on - strand, within Dshi_3460at 3642.084 kb on + strand, within Dshi_3460at 3642.184 kb on + strand, within Dshi_3460at 3642.266 kb on + strand, within Dshi_3460at 3642.275 kb on + strand, within Dshi_3460at 3642.275 kb on + strand, within Dshi_3460at 3642.288 kb on + strand, within Dshi_3460at 3642.308 kb on + strand, within Dshi_3460at 3642.310 kb on + strand, within Dshi_3460at 3642.318 kb on - strand, within Dshi_3460at 3642.360 kb on + strand, within Dshi_3460

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
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3,641,079 - -0.7
3,641,079 - +0.4
3,641,112 + Dshi_3459 0.10 -1.5
3,641,117 + Dshi_3459 0.12 +0.3
3,641,125 - Dshi_3459 0.14 -0.9
3,641,209 - Dshi_3459 0.38 -2.7
3,641,469 - +0.7
3,641,618 - Dshi_3460 0.17 -2.3
3,641,652 - Dshi_3460 0.20 -0.1
3,641,711 + Dshi_3460 0.25 +0.1
3,641,711 + Dshi_3460 0.25 +1.5
3,641,735 - Dshi_3460 0.27 -0.9
3,641,764 + Dshi_3460 0.29 -0.7
3,641,839 + Dshi_3460 0.36 -0.5
3,641,839 + Dshi_3460 0.36 +0.3
3,641,841 + Dshi_3460 0.36 +0.2
3,641,956 + Dshi_3460 0.46 -0.6
3,641,957 + Dshi_3460 0.46 -0.1
3,641,964 - Dshi_3460 0.46 +0.7
3,641,981 - Dshi_3460 0.48 -1.1
3,641,991 + Dshi_3460 0.49 -0.6
3,642,044 + Dshi_3460 0.53 -1.1
3,642,044 + Dshi_3460 0.53 +0.5
3,642,044 + Dshi_3460 0.53 +0.1
3,642,044 + Dshi_3460 0.53 +0.6
3,642,044 + Dshi_3460 0.53 -0.3
3,642,044 + Dshi_3460 0.53 +0.6
3,642,044 + Dshi_3460 0.53 -0.3
3,642,052 - Dshi_3460 0.54 +0.6
3,642,052 - Dshi_3460 0.54 +0.4
3,642,084 + Dshi_3460 0.57 +1.1
3,642,184 + Dshi_3460 0.65 +0.5
3,642,266 + Dshi_3460 0.72 -0.2
3,642,275 + Dshi_3460 0.73 -0.5
3,642,275 + Dshi_3460 0.73 +2.1
3,642,288 + Dshi_3460 0.74 +1.3
3,642,308 + Dshi_3460 0.76 +0.6
3,642,310 + Dshi_3460 0.76 -1.2
3,642,318 - Dshi_3460 0.77 -1.1
3,642,360 + Dshi_3460 0.80 -0.8

Or see this region's nucleotide sequence