Experiment: m.b. Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3022 and Dshi_3023 overlap by 4 nucleotides Dshi_3023 and Dshi_3024 are separated by 111 nucleotides
Dshi_3022: Dshi_3022 - PfkB domain protein (RefSeq), at 3,192,313 to 3,193,314
_3022
Dshi_3023: Dshi_3023 - endonuclease III (RefSeq), at 3,193,311 to 3,193,955
_3023
Dshi_3024: Dshi_3024 - transcriptional regulator, AraC family (RefSeq), at 3,194,067 to 3,194,930
_3024
Position (kb)
3193
3194 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3192.311 kb on + strand at 3192.392 kb on - strand at 3192.629 kb on + strand, within Dshi_3022 at 3192.642 kb on - strand, within Dshi_3022 at 3192.642 kb on - strand, within Dshi_3022 at 3192.642 kb on - strand, within Dshi_3022 at 3192.749 kb on - strand, within Dshi_3022 at 3192.788 kb on + strand, within Dshi_3022 at 3192.979 kb on - strand, within Dshi_3022 at 3193.133 kb on + strand, within Dshi_3022 at 3193.133 kb on + strand, within Dshi_3022 at 3193.231 kb on + strand at 3193.295 kb on - strand at 3193.381 kb on + strand, within Dshi_3023 at 3193.571 kb on + strand, within Dshi_3023 at 3193.639 kb on + strand, within Dshi_3023 at 3193.698 kb on + strand, within Dshi_3023 at 3193.754 kb on - strand, within Dshi_3023 at 3193.808 kb on - strand, within Dshi_3023 at 3193.844 kb on + strand, within Dshi_3023 at 3193.872 kb on - strand, within Dshi_3023 at 3193.900 kb on + strand at 3193.971 kb on - strand at 3193.971 kb on - strand at 3194.015 kb on + strand at 3194.154 kb on + strand, within Dshi_3024 at 3194.160 kb on - strand, within Dshi_3024 at 3194.253 kb on - strand, within Dshi_3024 at 3194.308 kb on + strand, within Dshi_3024 at 3194.344 kb on - strand, within Dshi_3024 at 3194.428 kb on - strand, within Dshi_3024 at 3194.465 kb on + strand, within Dshi_3024 at 3194.465 kb on + strand, within Dshi_3024 at 3194.596 kb on - strand, within Dshi_3024 at 3194.639 kb on - strand, within Dshi_3024 at 3194.714 kb on - strand, within Dshi_3024 at 3194.756 kb on + strand, within Dshi_3024 at 3194.756 kb on + strand, within Dshi_3024 at 3194.764 kb on - strand, within Dshi_3024 at 3194.897 kb on - strand at 3194.921 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml remove 3,192,311 + -0.6 3,192,392 - +0.2 3,192,629 + Dshi_3022 0.32 -0.3 3,192,642 - Dshi_3022 0.33 -0.5 3,192,642 - Dshi_3022 0.33 +0.6 3,192,642 - Dshi_3022 0.33 +0.4 3,192,749 - Dshi_3022 0.44 +1.0 3,192,788 + Dshi_3022 0.47 -2.0 3,192,979 - Dshi_3022 0.66 -0.3 3,193,133 + Dshi_3022 0.82 -1.9 3,193,133 + Dshi_3022 0.82 -3.3 3,193,231 + -0.1 3,193,295 - -1.1 3,193,381 + Dshi_3023 0.11 -0.0 3,193,571 + Dshi_3023 0.40 -1.7 3,193,639 + Dshi_3023 0.51 -0.7 3,193,698 + Dshi_3023 0.60 +0.5 3,193,754 - Dshi_3023 0.69 +0.3 3,193,808 - Dshi_3023 0.77 -1.3 3,193,844 + Dshi_3023 0.83 -1.0 3,193,872 - Dshi_3023 0.87 -0.8 3,193,900 + -0.4 3,193,971 - -2.0 3,193,971 - +0.2 3,194,015 + +0.2 3,194,154 + Dshi_3024 0.10 +0.8 3,194,160 - Dshi_3024 0.11 +1.6 3,194,253 - Dshi_3024 0.22 +0.4 3,194,308 + Dshi_3024 0.28 -1.4 3,194,344 - Dshi_3024 0.32 +0.0 3,194,428 - Dshi_3024 0.42 -0.3 3,194,465 + Dshi_3024 0.46 -2.0 3,194,465 + Dshi_3024 0.46 -0.4 3,194,596 - Dshi_3024 0.61 -0.0 3,194,639 - Dshi_3024 0.66 +0.3 3,194,714 - Dshi_3024 0.75 +1.0 3,194,756 + Dshi_3024 0.80 +0.1 3,194,756 + Dshi_3024 0.80 +0.4 3,194,764 - Dshi_3024 0.81 -0.0 3,194,897 - -1.1 3,194,921 + +2.0
Or see this region's nucleotide sequence