Experiment: m.b. Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2955 and Dshi_2956 are separated by 88 nucleotides Dshi_2956 and Dshi_2957 are separated by 226 nucleotides Dshi_2957 and Dshi_2958 are separated by 245 nucleotides
Dshi_2955: Dshi_2955 - histidyl-tRNA synthetase (RefSeq), at 3,115,954 to 3,117,447
_2955
Dshi_2956: Dshi_2956 - SlyX family protein (RefSeq), at 3,117,536 to 3,117,745
_2956
Dshi_2957: Dshi_2957 - DNA polymerase III, alpha subunit (RefSeq), at 3,117,972 to 3,121,466
_2957
Dshi_2958: Dshi_2958 - Xanthine dehydrogenase (EC 1.17.1.4) (from data) , at 3,121,712 to 3,123,163
_2958
Position (kb)
3117
3118
3119
3120
3121
3122 Strain fitness (log2 ratio)
-1
0
1 at 3117.532 kb on + strand at 3117.542 kb on - strand at 3117.542 kb on - strand at 3117.791 kb on - strand at 3117.824 kb on - strand at 3121.553 kb on - strand at 3121.582 kb on - strand at 3121.655 kb on - strand at 3121.656 kb on + strand at 3121.673 kb on + strand at 3121.681 kb on - strand at 3121.813 kb on - strand at 3121.815 kb on + strand at 3121.947 kb on - strand, within Dshi_2958 at 3122.164 kb on - strand, within Dshi_2958 at 3122.184 kb on + strand, within Dshi_2958 at 3122.303 kb on + strand, within Dshi_2958 at 3122.343 kb on + strand, within Dshi_2958 at 3122.404 kb on + strand, within Dshi_2958
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml remove 3,117,532 + +0.5 3,117,542 - -1.1 3,117,542 - -0.1 3,117,791 - -0.1 3,117,824 - +0.3 3,121,553 - +0.4 3,121,582 - -0.1 3,121,655 - -0.6 3,121,656 + -0.4 3,121,673 + +0.5 3,121,681 - -0.3 3,121,813 - +0.1 3,121,815 + +0.4 3,121,947 - Dshi_2958 0.16 +0.5 3,122,164 - Dshi_2958 0.31 +0.3 3,122,184 + Dshi_2958 0.33 -0.6 3,122,303 + Dshi_2958 0.41 -0.3 3,122,343 + Dshi_2958 0.43 +1.6 3,122,404 + Dshi_2958 0.48 -1.0
Or see this region's nucleotide sequence