Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2867

Experiment: m.b. Cisplatin 0.05 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_2865 and Dshi_2866 are separated by 16 nucleotidesDshi_2866 and Dshi_2867 are separated by 11 nucleotidesDshi_2867 and Dshi_2868 are separated by 299 nucleotidesDshi_2868 and Dshi_2869 are separated by 9 nucleotides Dshi_2865: Dshi_2865 - succinate dehydrogenase, flavoprotein subunit (RefSeq), at 3,021,696 to 3,023,498 _2865 Dshi_2866: Dshi_2866 - Succinate dehydrogenase hydrophobic membrane anchor (RefSeq), at 3,023,515 to 3,023,886 _2866 Dshi_2867: Dshi_2867 - Succinate dehydrogenase cytochrome b556 subunit (RefSeq), at 3,023,898 to 3,024,281 _2867 Dshi_2868: Dshi_2868 - cytochrome c class II (RefSeq), at 3,024,581 to 3,025,060 _2868 Dshi_2869: Dshi_2869 - Gluconate 2-dehydrogenase (acceptor) (RefSeq), at 3,025,070 to 3,025,948 _2869 Position (kb) 3023 3024 3025Strain fitness (log2 ratio) -1 0 1at 3024.467 kb on - strandat 3024.608 kb on + strandat 3024.659 kb on + strand, within Dshi_2868at 3024.659 kb on + strand, within Dshi_2868at 3024.729 kb on - strand, within Dshi_2868at 3024.745 kb on + strand, within Dshi_2868at 3024.993 kb on - strand, within Dshi_2868at 3024.996 kb on + strand, within Dshi_2868at 3025.006 kb on + strand, within Dshi_2868at 3025.099 kb on + strandat 3025.149 kb on - strandat 3025.215 kb on - strand, within Dshi_2869at 3025.270 kb on + strand, within Dshi_2869

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
remove
3,024,467 - -0.9
3,024,608 + -1.1
3,024,659 + Dshi_2868 0.16 -0.3
3,024,659 + Dshi_2868 0.16 +0.3
3,024,729 - Dshi_2868 0.31 -0.4
3,024,745 + Dshi_2868 0.34 +1.4
3,024,993 - Dshi_2868 0.86 -0.7
3,024,996 + Dshi_2868 0.86 +0.1
3,025,006 + Dshi_2868 0.89 -0.8
3,025,099 + -1.3
3,025,149 - +0.3
3,025,215 - Dshi_2869 0.16 -1.7
3,025,270 + Dshi_2869 0.23 -0.2

Or see this region's nucleotide sequence