Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2119

Experiment: m.b. Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2118 and Dshi_2119 are separated by 38 nucleotidesDshi_2119 and Dshi_2120 are separated by 184 nucleotides Dshi_2118: Dshi_2118 - transcriptional regulator, AraC family (RefSeq), at 2,248,012 to 2,248,998 _2118 Dshi_2119: Dshi_2119 - choline/carnitine/betaine transporter (RefSeq), at 2,249,037 to 2,250,611 _2119 Dshi_2120: Dshi_2120 - ABC transporter related (RefSeq), at 2,250,796 to 2,251,926 _2120 Position (kb) 2249 2250 2251Strain fitness (log2 ratio) -2 -1 0 1at 2248.045 kb on + strandat 2248.072 kb on - strandat 2248.205 kb on + strand, within Dshi_2118at 2248.235 kb on + strand, within Dshi_2118at 2248.235 kb on + strand, within Dshi_2118at 2248.235 kb on + strand, within Dshi_2118at 2248.235 kb on + strand, within Dshi_2118at 2248.235 kb on + strand, within Dshi_2118at 2248.243 kb on - strand, within Dshi_2118at 2248.360 kb on - strand, within Dshi_2118at 2248.381 kb on + strand, within Dshi_2118at 2248.476 kb on - strand, within Dshi_2118at 2248.481 kb on - strand, within Dshi_2118at 2248.513 kb on - strand, within Dshi_2118at 2248.519 kb on + strand, within Dshi_2118at 2248.648 kb on + strand, within Dshi_2118at 2248.761 kb on - strand, within Dshi_2118at 2248.794 kb on + strand, within Dshi_2118at 2248.802 kb on - strand, within Dshi_2118at 2248.809 kb on + strand, within Dshi_2118at 2248.864 kb on - strand, within Dshi_2118at 2249.056 kb on + strandat 2249.170 kb on + strandat 2249.254 kb on + strand, within Dshi_2119at 2249.256 kb on + strand, within Dshi_2119at 2249.290 kb on + strand, within Dshi_2119at 2249.393 kb on + strand, within Dshi_2119at 2249.445 kb on - strand, within Dshi_2119at 2249.566 kb on - strand, within Dshi_2119at 2249.591 kb on + strand, within Dshi_2119at 2249.628 kb on + strand, within Dshi_2119at 2249.651 kb on + strand, within Dshi_2119at 2249.661 kb on + strand, within Dshi_2119at 2249.750 kb on + strand, within Dshi_2119at 2249.762 kb on - strand, within Dshi_2119at 2249.771 kb on - strand, within Dshi_2119at 2249.801 kb on + strand, within Dshi_2119at 2249.817 kb on + strand, within Dshi_2119at 2249.818 kb on + strand, within Dshi_2119at 2249.821 kb on - strand, within Dshi_2119at 2249.854 kb on + strand, within Dshi_2119at 2249.915 kb on - strand, within Dshi_2119at 2249.935 kb on + strand, within Dshi_2119at 2249.943 kb on - strand, within Dshi_2119at 2249.964 kb on - strand, within Dshi_2119at 2249.964 kb on - strand, within Dshi_2119at 2249.978 kb on + strand, within Dshi_2119at 2249.978 kb on + strand, within Dshi_2119at 2249.979 kb on - strand, within Dshi_2119at 2249.986 kb on - strand, within Dshi_2119at 2249.986 kb on - strand, within Dshi_2119at 2250.155 kb on + strand, within Dshi_2119at 2250.155 kb on + strand, within Dshi_2119at 2250.173 kb on - strand, within Dshi_2119at 2250.207 kb on - strand, within Dshi_2119at 2250.313 kb on + strand, within Dshi_2119at 2250.313 kb on + strand, within Dshi_2119at 2250.321 kb on - strand, within Dshi_2119at 2250.321 kb on - strand, within Dshi_2119at 2250.342 kb on + strand, within Dshi_2119at 2250.416 kb on - strand, within Dshi_2119at 2250.443 kb on + strand, within Dshi_2119at 2250.588 kb on + strandat 2250.591 kb on - strandat 2250.591 kb on - strandat 2250.593 kb on + strandat 2250.593 kb on + strandat 2250.593 kb on + strandat 2250.593 kb on + strandat 2250.601 kb on - strandat 2250.606 kb on - strandat 2250.628 kb on + strandat 2250.636 kb on - strandat 2250.636 kb on - strandat 2250.717 kb on - strandat 2250.720 kb on + strandat 2250.728 kb on - strandat 2250.777 kb on + strandat 2250.802 kb on - strandat 2250.850 kb on + strandat 2250.922 kb on + strand, within Dshi_2120at 2250.922 kb on - strand, within Dshi_2120at 2250.959 kb on - strand, within Dshi_2120at 2251.063 kb on + strand, within Dshi_2120at 2251.071 kb on - strand, within Dshi_2120at 2251.078 kb on - strand, within Dshi_2120at 2251.089 kb on + strand, within Dshi_2120at 2251.094 kb on + strand, within Dshi_2120at 2251.107 kb on - strand, within Dshi_2120at 2251.154 kb on - strand, within Dshi_2120at 2251.229 kb on - strand, within Dshi_2120at 2251.252 kb on - strand, within Dshi_2120at 2251.252 kb on - strand, within Dshi_2120at 2251.270 kb on + strand, within Dshi_2120at 2251.300 kb on - strand, within Dshi_2120at 2251.305 kb on + strand, within Dshi_2120at 2251.325 kb on + strand, within Dshi_2120at 2251.363 kb on + strand, within Dshi_2120at 2251.367 kb on - strand, within Dshi_2120at 2251.387 kb on + strand, within Dshi_2120at 2251.422 kb on - strand, within Dshi_2120at 2251.444 kb on + strand, within Dshi_2120at 2251.447 kb on + strand, within Dshi_2120at 2251.459 kb on + strand, within Dshi_2120at 2251.459 kb on + strand, within Dshi_2120at 2251.464 kb on + strand, within Dshi_2120at 2251.464 kb on + strand, within Dshi_2120at 2251.473 kb on - strand, within Dshi_2120at 2251.484 kb on - strand, within Dshi_2120at 2251.487 kb on + strand, within Dshi_2120

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
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2,248,045 + -0.1
2,248,072 - +1.2
2,248,205 + Dshi_2118 0.20 -1.5
2,248,235 + Dshi_2118 0.23 +0.6
2,248,235 + Dshi_2118 0.23 +1.2
2,248,235 + Dshi_2118 0.23 +0.4
2,248,235 + Dshi_2118 0.23 +0.9
2,248,235 + Dshi_2118 0.23 +0.5
2,248,243 - Dshi_2118 0.23 +0.2
2,248,360 - Dshi_2118 0.35 -0.3
2,248,381 + Dshi_2118 0.37 +0.8
2,248,476 - Dshi_2118 0.47 -2.1
2,248,481 - Dshi_2118 0.48 +0.1
2,248,513 - Dshi_2118 0.51 -1.4
2,248,519 + Dshi_2118 0.51 +0.1
2,248,648 + Dshi_2118 0.64 -0.0
2,248,761 - Dshi_2118 0.76 +0.0
2,248,794 + Dshi_2118 0.79 -0.5
2,248,802 - Dshi_2118 0.80 +0.7
2,248,809 + Dshi_2118 0.81 -0.8
2,248,864 - Dshi_2118 0.86 -1.6
2,249,056 + -0.1
2,249,170 + -0.5
2,249,254 + Dshi_2119 0.14 -1.0
2,249,256 + Dshi_2119 0.14 -0.8
2,249,290 + Dshi_2119 0.16 -0.4
2,249,393 + Dshi_2119 0.23 +0.2
2,249,445 - Dshi_2119 0.26 -0.2
2,249,566 - Dshi_2119 0.34 +0.5
2,249,591 + Dshi_2119 0.35 -0.0
2,249,628 + Dshi_2119 0.38 +0.8
2,249,651 + Dshi_2119 0.39 -0.1
2,249,661 + Dshi_2119 0.40 -1.8
2,249,750 + Dshi_2119 0.45 -1.6
2,249,762 - Dshi_2119 0.46 +0.5
2,249,771 - Dshi_2119 0.47 +1.2
2,249,801 + Dshi_2119 0.49 +0.4
2,249,817 + Dshi_2119 0.50 -0.5
2,249,818 + Dshi_2119 0.50 +1.0
2,249,821 - Dshi_2119 0.50 -1.4
2,249,854 + Dshi_2119 0.52 +1.3
2,249,915 - Dshi_2119 0.56 -0.5
2,249,935 + Dshi_2119 0.57 -0.3
2,249,943 - Dshi_2119 0.58 +1.1
2,249,964 - Dshi_2119 0.59 -2.0
2,249,964 - Dshi_2119 0.59 +0.6
2,249,978 + Dshi_2119 0.60 -0.1
2,249,978 + Dshi_2119 0.60 -0.3
2,249,979 - Dshi_2119 0.60 +1.0
2,249,986 - Dshi_2119 0.60 -0.8
2,249,986 - Dshi_2119 0.60 +0.2
2,250,155 + Dshi_2119 0.71 +0.6
2,250,155 + Dshi_2119 0.71 -0.9
2,250,173 - Dshi_2119 0.72 -0.2
2,250,207 - Dshi_2119 0.74 -0.1
2,250,313 + Dshi_2119 0.81 -1.6
2,250,313 + Dshi_2119 0.81 +0.8
2,250,321 - Dshi_2119 0.82 +0.4
2,250,321 - Dshi_2119 0.82 -0.1
2,250,342 + Dshi_2119 0.83 +0.7
2,250,416 - Dshi_2119 0.88 -0.4
2,250,443 + Dshi_2119 0.89 +0.2
2,250,588 + -1.4
2,250,591 - -0.3
2,250,591 - -0.5
2,250,593 + -0.1
2,250,593 + +0.3
2,250,593 + +1.7
2,250,593 + -1.0
2,250,601 - +0.1
2,250,606 - -0.5
2,250,628 + -0.2
2,250,636 - -0.3
2,250,636 - -0.8
2,250,717 - -0.5
2,250,720 + -1.0
2,250,728 - +0.8
2,250,777 + -0.3
2,250,802 - +0.4
2,250,850 + +0.7
2,250,922 + Dshi_2120 0.11 -0.4
2,250,922 - Dshi_2120 0.11 -0.2
2,250,959 - Dshi_2120 0.14 +0.2
2,251,063 + Dshi_2120 0.24 -0.8
2,251,071 - Dshi_2120 0.24 -0.8
2,251,078 - Dshi_2120 0.25 -0.9
2,251,089 + Dshi_2120 0.26 -0.6
2,251,094 + Dshi_2120 0.26 -1.2
2,251,107 - Dshi_2120 0.27 +1.1
2,251,154 - Dshi_2120 0.32 -0.5
2,251,229 - Dshi_2120 0.38 +0.9
2,251,252 - Dshi_2120 0.40 +1.2
2,251,252 - Dshi_2120 0.40 -1.2
2,251,270 + Dshi_2120 0.42 -0.8
2,251,300 - Dshi_2120 0.45 +0.2
2,251,305 + Dshi_2120 0.45 -0.2
2,251,325 + Dshi_2120 0.47 -0.8
2,251,363 + Dshi_2120 0.50 -0.8
2,251,367 - Dshi_2120 0.50 +0.3
2,251,387 + Dshi_2120 0.52 +0.9
2,251,422 - Dshi_2120 0.55 -0.5
2,251,444 + Dshi_2120 0.57 +0.2
2,251,447 + Dshi_2120 0.58 -1.0
2,251,459 + Dshi_2120 0.59 -1.8
2,251,459 + Dshi_2120 0.59 -0.3
2,251,464 + Dshi_2120 0.59 -0.1
2,251,464 + Dshi_2120 0.59 +0.2
2,251,473 - Dshi_2120 0.60 +0.2
2,251,484 - Dshi_2120 0.61 -0.3
2,251,487 + Dshi_2120 0.61 +0.0

Or see this region's nucleotide sequence