Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2082

Experiment: m.b. Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2080 and Dshi_2081 are separated by 66 nucleotidesDshi_2081 and Dshi_2082 overlap by 4 nucleotidesDshi_2082 and Dshi_2083 are separated by 151 nucleotidesDshi_2083 and Dshi_2084 are separated by 90 nucleotides Dshi_2080: Dshi_2080 - 5,10-methylenetetrahydrofolate reductase (RefSeq), at 2,200,594 to 2,201,463 _2080 Dshi_2081: Dshi_2081 - cytochrome c class I (RefSeq), at 2,201,530 to 2,202,114 _2081 Dshi_2082: Dshi_2082 - L-sorbosone dehydrogenase, putative (RefSeq), at 2,202,111 to 2,203,370 _2082 Dshi_2083: Dshi_2083 - thioesterase superfamily protein (RefSeq), at 2,203,522 to 2,203,989 _2083 Dshi_2084: Dshi_2084 - hypothetical protein (RefSeq), at 2,204,080 to 2,205,153 _2084 Position (kb) 2202 2203 2204Strain fitness (log2 ratio) -2 -1 0 1 2at 2201.514 kb on - strandat 2201.541 kb on + strandat 2201.665 kb on - strand, within Dshi_2081at 2201.665 kb on - strand, within Dshi_2081at 2201.763 kb on - strand, within Dshi_2081at 2201.763 kb on - strand, within Dshi_2081at 2201.909 kb on + strand, within Dshi_2081at 2202.058 kb on - strandat 2202.138 kb on - strandat 2202.166 kb on + strandat 2202.341 kb on + strand, within Dshi_2082at 2202.422 kb on + strand, within Dshi_2082at 2202.451 kb on - strand, within Dshi_2082at 2202.512 kb on - strand, within Dshi_2082at 2202.530 kb on - strand, within Dshi_2082at 2202.593 kb on - strand, within Dshi_2082at 2202.606 kb on - strand, within Dshi_2082at 2202.616 kb on + strand, within Dshi_2082at 2202.706 kb on + strand, within Dshi_2082at 2202.757 kb on - strand, within Dshi_2082at 2202.830 kb on + strand, within Dshi_2082at 2202.832 kb on - strand, within Dshi_2082at 2202.969 kb on + strand, within Dshi_2082at 2203.043 kb on - strand, within Dshi_2082at 2203.086 kb on + strand, within Dshi_2082at 2203.087 kb on + strand, within Dshi_2082at 2203.130 kb on - strand, within Dshi_2082at 2203.130 kb on - strand, within Dshi_2082at 2203.225 kb on + strand, within Dshi_2082at 2203.308 kb on - strandat 2203.323 kb on + strandat 2203.565 kb on - strandat 2203.675 kb on + strand, within Dshi_2083at 2203.677 kb on + strand, within Dshi_2083at 2203.683 kb on - strand, within Dshi_2083at 2203.688 kb on + strand, within Dshi_2083at 2203.711 kb on + strand, within Dshi_2083at 2203.808 kb on - strand, within Dshi_2083at 2203.895 kb on - strand, within Dshi_2083at 2203.955 kb on - strandat 2203.978 kb on - strandat 2204.047 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
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2,201,514 - -0.8
2,201,541 + +1.9
2,201,665 - Dshi_2081 0.23 +0.4
2,201,665 - Dshi_2081 0.23 -0.5
2,201,763 - Dshi_2081 0.40 +0.4
2,201,763 - Dshi_2081 0.40 +1.8
2,201,909 + Dshi_2081 0.65 +0.8
2,202,058 - +0.6
2,202,138 - +1.2
2,202,166 + -0.3
2,202,341 + Dshi_2082 0.18 -0.9
2,202,422 + Dshi_2082 0.25 +0.8
2,202,451 - Dshi_2082 0.27 -0.4
2,202,512 - Dshi_2082 0.32 -0.4
2,202,530 - Dshi_2082 0.33 +2.2
2,202,593 - Dshi_2082 0.38 -0.9
2,202,606 - Dshi_2082 0.39 -1.8
2,202,616 + Dshi_2082 0.40 +1.7
2,202,706 + Dshi_2082 0.47 +0.2
2,202,757 - Dshi_2082 0.51 +0.8
2,202,830 + Dshi_2082 0.57 -0.6
2,202,832 - Dshi_2082 0.57 +0.6
2,202,969 + Dshi_2082 0.68 -0.5
2,203,043 - Dshi_2082 0.74 -0.7
2,203,086 + Dshi_2082 0.77 -0.8
2,203,087 + Dshi_2082 0.77 -0.8
2,203,130 - Dshi_2082 0.81 -0.6
2,203,130 - Dshi_2082 0.81 +0.5
2,203,225 + Dshi_2082 0.88 +0.9
2,203,308 - -0.2
2,203,323 + -0.3
2,203,565 - +1.6
2,203,675 + Dshi_2083 0.33 +0.6
2,203,677 + Dshi_2083 0.33 -1.0
2,203,683 - Dshi_2083 0.34 -0.8
2,203,688 + Dshi_2083 0.35 +0.8
2,203,711 + Dshi_2083 0.40 -0.8
2,203,808 - Dshi_2083 0.61 +0.0
2,203,895 - Dshi_2083 0.80 +2.2
2,203,955 - +0.1
2,203,978 - +0.8
2,204,047 + +0.2

Or see this region's nucleotide sequence