Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1966

Experiment: m.b. Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1965 and Dshi_1966 are separated by 259 nucleotidesDshi_1966 and Dshi_1967 are separated by 12 nucleotides Dshi_1965: Dshi_1965 - hypothetical protein (RefSeq), at 2,072,939 to 2,073,871 _1965 Dshi_1966: Dshi_1966 - dihydrolipoamide dehydrogenase (RefSeq), at 2,074,131 to 2,075,873 _1966 Dshi_1967: Dshi_1967 - catalytic domain of components of various dehydrogenase complexes (RefSeq), at 2,075,886 to 2,077,187 _1967 Position (kb) 2074 2075 2076Strain fitness (log2 ratio) -2 -1 0 1 2at 2073.146 kb on + strand, within Dshi_1965at 2073.302 kb on + strand, within Dshi_1965at 2073.483 kb on + strand, within Dshi_1965at 2073.491 kb on - strand, within Dshi_1965at 2073.491 kb on - strand, within Dshi_1965at 2073.491 kb on - strand, within Dshi_1965at 2073.605 kb on + strand, within Dshi_1965at 2073.683 kb on + strand, within Dshi_1965at 2073.709 kb on - strand, within Dshi_1965at 2073.838 kb on + strandat 2073.904 kb on - strandat 2073.952 kb on - strandat 2074.020 kb on - strandat 2074.119 kb on + strandat 2074.237 kb on + strandat 2074.237 kb on - strandat 2074.247 kb on + strandat 2074.259 kb on - strandat 2074.288 kb on - strandat 2074.447 kb on + strand, within Dshi_1966at 2074.479 kb on + strand, within Dshi_1966at 2074.508 kb on - strand, within Dshi_1966at 2074.542 kb on - strand, within Dshi_1966at 2074.576 kb on + strand, within Dshi_1966at 2074.586 kb on - strand, within Dshi_1966at 2074.635 kb on + strand, within Dshi_1966at 2074.656 kb on - strand, within Dshi_1966at 2074.784 kb on + strandat 2074.819 kb on - strand, within Dshi_1966at 2074.847 kb on + strand, within Dshi_1966at 2075.035 kb on - strand, within Dshi_1966at 2075.060 kb on + strand, within Dshi_1966at 2075.068 kb on - strand, within Dshi_1966at 2075.149 kb on - strand, within Dshi_1966at 2075.223 kb on + strand, within Dshi_1966at 2075.240 kb on - strand, within Dshi_1966at 2075.882 kb on + strandat 2075.961 kb on - strandat 2075.972 kb on + strandat 2076.033 kb on - strand, within Dshi_1967at 2076.092 kb on + strand, within Dshi_1967at 2076.160 kb on - strand, within Dshi_1967at 2076.160 kb on - strand, within Dshi_1967at 2076.234 kb on - strand, within Dshi_1967at 2076.281 kb on + strand, within Dshi_1967at 2076.289 kb on - strand, within Dshi_1967at 2076.363 kb on + strand, within Dshi_1967at 2076.424 kb on + strand, within Dshi_1967at 2076.424 kb on + strand, within Dshi_1967at 2076.432 kb on - strand, within Dshi_1967at 2076.432 kb on - strand, within Dshi_1967at 2076.787 kb on - strand, within Dshi_1967at 2076.791 kb on - strand, within Dshi_1967

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
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2,073,146 + Dshi_1965 0.22 +0.2
2,073,302 + Dshi_1965 0.39 -1.3
2,073,483 + Dshi_1965 0.58 -0.2
2,073,491 - Dshi_1965 0.59 -0.8
2,073,491 - Dshi_1965 0.59 -0.1
2,073,491 - Dshi_1965 0.59 -0.6
2,073,605 + Dshi_1965 0.71 +0.7
2,073,683 + Dshi_1965 0.80 -0.9
2,073,709 - Dshi_1965 0.83 -0.5
2,073,838 + -1.1
2,073,904 - -0.0
2,073,952 - -0.4
2,074,020 - -0.3
2,074,119 + -0.3
2,074,237 + +0.4
2,074,237 - +1.7
2,074,247 + +0.2
2,074,259 - +0.9
2,074,288 - +0.8
2,074,447 + Dshi_1966 0.18 +1.6
2,074,479 + Dshi_1966 0.20 +0.8
2,074,508 - Dshi_1966 0.22 +0.8
2,074,542 - Dshi_1966 0.24 +0.4
2,074,576 + Dshi_1966 0.26 +2.4
2,074,586 - Dshi_1966 0.26 +0.3
2,074,635 + Dshi_1966 0.29 +0.7
2,074,656 - Dshi_1966 0.30 +0.7
2,074,784 + -1.8
2,074,819 - Dshi_1966 0.39 +0.4
2,074,847 + Dshi_1966 0.41 +0.7
2,075,035 - Dshi_1966 0.52 +0.8
2,075,060 + Dshi_1966 0.53 +0.1
2,075,068 - Dshi_1966 0.54 -0.1
2,075,149 - Dshi_1966 0.58 -0.7
2,075,223 + Dshi_1966 0.63 +0.3
2,075,240 - Dshi_1966 0.64 -0.2
2,075,882 + +1.9
2,075,961 - +1.8
2,075,972 + +1.4
2,076,033 - Dshi_1967 0.11 -1.3
2,076,092 + Dshi_1967 0.16 +0.3
2,076,160 - Dshi_1967 0.21 +0.7
2,076,160 - Dshi_1967 0.21 +0.6
2,076,234 - Dshi_1967 0.27 +0.1
2,076,281 + Dshi_1967 0.30 +1.1
2,076,289 - Dshi_1967 0.31 +0.7
2,076,363 + Dshi_1967 0.37 -0.1
2,076,424 + Dshi_1967 0.41 +0.0
2,076,424 + Dshi_1967 0.41 +0.9
2,076,432 - Dshi_1967 0.42 +0.9
2,076,432 - Dshi_1967 0.42 +0.8
2,076,787 - Dshi_1967 0.69 +0.6
2,076,791 - Dshi_1967 0.70 +0.2

Or see this region's nucleotide sequence