Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1805

Experiment: m.b. Cisplatin 0.05 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_1804 and Dshi_1805 are separated by 108 nucleotidesDshi_1805 and Dshi_1806 are separated by 115 nucleotides Dshi_1804: Dshi_1804 - ComEC/Rec2-related protein (RefSeq), at 1,875,927 to 1,878,011 _1804 Dshi_1805: Dshi_1805 - glutamyl-tRNA synthetase (RefSeq), at 1,878,120 to 1,879,535 _1805 Dshi_1806: Dshi_1806 - citrate synthase I (RefSeq), at 1,879,651 to 1,880,943 _1806 Position (kb) 1878 1879 1880Strain fitness (log2 ratio) -1 0 1at 1877.221 kb on + strand, within Dshi_1804at 1877.376 kb on - strand, within Dshi_1804at 1877.423 kb on - strand, within Dshi_1804at 1877.462 kb on - strand, within Dshi_1804at 1877.823 kb on + strandat 1877.823 kb on + strandat 1877.891 kb on - strandat 1877.940 kb on - strandat 1877.950 kb on - strandat 1877.952 kb on + strandat 1877.952 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
remove
1,877,221 + Dshi_1804 0.62 -0.1
1,877,376 - Dshi_1804 0.69 -0.1
1,877,423 - Dshi_1804 0.72 +0.1
1,877,462 - Dshi_1804 0.74 -0.2
1,877,823 + -0.2
1,877,823 + -0.7
1,877,891 - -0.3
1,877,940 - -0.7
1,877,950 - +0.3
1,877,952 + -0.4
1,877,952 + -0.7

Or see this region's nucleotide sequence