Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1647

Experiment: m.b. Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1646 and Dshi_1647 are separated by 79 nucleotidesDshi_1647 and Dshi_1648 are separated by 274 nucleotides Dshi_1646: Dshi_1646 - inosine-5'-monophosphate dehydrogenase (RefSeq), at 1,709,530 to 1,710,984 _1646 Dshi_1647: Dshi_1647 - 2-dehydro-3-deoxyglucarate aldolase (RefSeq), at 1,711,064 to 1,711,846 _1647 Dshi_1648: Dshi_1648 - glucose/maltose/trehalose/sucrose ABC transporter, ATPase component (from data), at 1,712,121 to 1,713,242 _1648 Position (kb) 1711 1712Strain fitness (log2 ratio) -2 -1 0 1 2at 1710.188 kb on - strand, within Dshi_1646at 1710.660 kb on + strand, within Dshi_1646at 1710.703 kb on + strand, within Dshi_1646at 1710.802 kb on - strand, within Dshi_1646at 1711.035 kb on + strandat 1711.049 kb on + strandat 1711.057 kb on - strandat 1711.067 kb on + strandat 1711.216 kb on + strand, within Dshi_1647at 1711.353 kb on + strand, within Dshi_1647at 1711.370 kb on + strand, within Dshi_1647at 1711.469 kb on + strand, within Dshi_1647at 1711.499 kb on + strand, within Dshi_1647at 1711.629 kb on + strand, within Dshi_1647at 1711.769 kb on + strandat 1711.850 kb on - strandat 1711.946 kb on - strandat 1711.987 kb on + strandat 1712.079 kb on - strandat 1712.186 kb on + strandat 1712.237 kb on - strand, within Dshi_1648at 1712.266 kb on + strand, within Dshi_1648at 1712.277 kb on + strand, within Dshi_1648at 1712.334 kb on - strand, within Dshi_1648at 1712.379 kb on - strand, within Dshi_1648at 1712.413 kb on + strand, within Dshi_1648at 1712.459 kb on - strand, within Dshi_1648at 1712.476 kb on + strand, within Dshi_1648at 1712.482 kb on + strand, within Dshi_1648at 1712.536 kb on + strand, within Dshi_1648at 1712.580 kb on + strand, within Dshi_1648at 1712.588 kb on - strand, within Dshi_1648at 1712.590 kb on + strand, within Dshi_1648at 1712.598 kb on - strand, within Dshi_1648at 1712.598 kb on - strand, within Dshi_1648at 1712.679 kb on - strand, within Dshi_1648at 1712.791 kb on - strand, within Dshi_1648at 1712.845 kb on + strand, within Dshi_1648

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
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1,710,188 - Dshi_1646 0.45 -0.9
1,710,660 + Dshi_1646 0.78 +0.7
1,710,703 + Dshi_1646 0.81 -1.9
1,710,802 - Dshi_1646 0.87 -0.2
1,711,035 + -0.2
1,711,049 + -1.0
1,711,057 - -0.7
1,711,067 + -0.5
1,711,216 + Dshi_1647 0.19 +0.1
1,711,353 + Dshi_1647 0.37 -1.3
1,711,370 + Dshi_1647 0.39 -0.7
1,711,469 + Dshi_1647 0.52 +0.3
1,711,499 + Dshi_1647 0.56 -0.2
1,711,629 + Dshi_1647 0.72 -0.4
1,711,769 + -0.2
1,711,850 - -0.4
1,711,946 - -0.8
1,711,987 + -1.0
1,712,079 - +0.2
1,712,186 + +1.9
1,712,237 - Dshi_1648 0.10 +0.9
1,712,266 + Dshi_1648 0.13 +1.4
1,712,277 + Dshi_1648 0.14 +1.5
1,712,334 - Dshi_1648 0.19 +1.2
1,712,379 - Dshi_1648 0.23 +2.0
1,712,413 + Dshi_1648 0.26 +1.2
1,712,459 - Dshi_1648 0.30 -2.2
1,712,476 + Dshi_1648 0.32 +1.4
1,712,482 + Dshi_1648 0.32 -1.0
1,712,536 + Dshi_1648 0.37 +1.4
1,712,580 + Dshi_1648 0.41 +1.6
1,712,588 - Dshi_1648 0.42 +2.3
1,712,590 + Dshi_1648 0.42 +1.3
1,712,598 - Dshi_1648 0.43 +0.2
1,712,598 - Dshi_1648 0.43 +1.0
1,712,679 - Dshi_1648 0.50 +1.9
1,712,791 - Dshi_1648 0.60 +1.1
1,712,845 + Dshi_1648 0.65 +1.7

Or see this region's nucleotide sequence