Experiment: m.b. Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1587 and Dshi_1588 overlap by 10 nucleotides Dshi_1588 and Dshi_1589 overlap by 4 nucleotides Dshi_1589 and Dshi_1590 are separated by 75 nucleotides
Dshi_1587: Dshi_1587 - GMP synthase, large subunit (RefSeq), at 1,653,185 to 1,654,747
_1587
Dshi_1588: Dshi_1588 - protein of unknown function DUF218 (RefSeq), at 1,654,738 to 1,655,379
_1588
Dshi_1589: Dshi_1589 - protein of unknown function DUF6 transmembrane (RefSeq), at 1,655,376 to 1,656,263
_1589
Dshi_1590: Dshi_1590 - membrane protein involved in aromatic hydrocarbon degradation (RefSeq), at 1,656,339 to 1,657,472
_1590
Position (kb)
1655
1656
1657 Strain fitness (log2 ratio)
-2
-1
0
1 at 1654.878 kb on - strand, within Dshi_1588 at 1654.885 kb on - strand, within Dshi_1588 at 1655.005 kb on - strand, within Dshi_1588 at 1655.064 kb on + strand, within Dshi_1588 at 1655.088 kb on + strand, within Dshi_1588 at 1655.100 kb on + strand, within Dshi_1588 at 1655.118 kb on - strand, within Dshi_1588 at 1655.230 kb on - strand, within Dshi_1588 at 1655.340 kb on + strand at 1655.484 kb on - strand, within Dshi_1589 at 1655.493 kb on - strand, within Dshi_1589 at 1655.524 kb on + strand, within Dshi_1589 at 1655.532 kb on - strand, within Dshi_1589 at 1655.589 kb on - strand, within Dshi_1589 at 1655.649 kb on + strand, within Dshi_1589 at 1655.657 kb on - strand, within Dshi_1589 at 1655.821 kb on + strand, within Dshi_1589 at 1655.821 kb on + strand, within Dshi_1589 at 1655.858 kb on - strand, within Dshi_1589 at 1655.932 kb on + strand, within Dshi_1589 at 1655.932 kb on + strand, within Dshi_1589 at 1655.955 kb on - strand, within Dshi_1589 at 1655.984 kb on - strand, within Dshi_1589 at 1655.989 kb on + strand, within Dshi_1589 at 1656.013 kb on + strand, within Dshi_1589 at 1656.017 kb on - strand, within Dshi_1589 at 1656.019 kb on + strand, within Dshi_1589 at 1656.066 kb on + strand, within Dshi_1589 at 1656.074 kb on - strand, within Dshi_1589 at 1656.087 kb on - strand, within Dshi_1589 at 1656.152 kb on - strand, within Dshi_1589 at 1656.159 kb on + strand, within Dshi_1589 at 1656.159 kb on + strand, within Dshi_1589 at 1656.168 kb on - strand, within Dshi_1589 at 1656.168 kb on - strand, within Dshi_1589 at 1656.317 kb on - strand at 1656.411 kb on + strand at 1656.482 kb on + strand, within Dshi_1590 at 1656.562 kb on - strand, within Dshi_1590 at 1656.566 kb on - strand, within Dshi_1590 at 1656.623 kb on + strand, within Dshi_1590 at 1656.623 kb on + strand, within Dshi_1590 at 1656.623 kb on + strand, within Dshi_1590 at 1656.633 kb on + strand, within Dshi_1590 at 1656.802 kb on - strand, within Dshi_1590 at 1657.072 kb on - strand, within Dshi_1590
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml remove 1,654,878 - Dshi_1588 0.22 -0.4 1,654,885 - Dshi_1588 0.23 -0.3 1,655,005 - Dshi_1588 0.42 -0.1 1,655,064 + Dshi_1588 0.51 -1.1 1,655,088 + Dshi_1588 0.55 +1.1 1,655,100 + Dshi_1588 0.56 -2.2 1,655,118 - Dshi_1588 0.59 -1.0 1,655,230 - Dshi_1588 0.77 -1.4 1,655,340 + +1.2 1,655,484 - Dshi_1589 0.12 +0.2 1,655,493 - Dshi_1589 0.13 +0.5 1,655,524 + Dshi_1589 0.17 +0.4 1,655,532 - Dshi_1589 0.18 -0.8 1,655,589 - Dshi_1589 0.24 +0.3 1,655,649 + Dshi_1589 0.31 -0.8 1,655,657 - Dshi_1589 0.32 -0.5 1,655,821 + Dshi_1589 0.50 -1.3 1,655,821 + Dshi_1589 0.50 +1.2 1,655,858 - Dshi_1589 0.54 +1.3 1,655,932 + Dshi_1589 0.63 +0.8 1,655,932 + Dshi_1589 0.63 -1.5 1,655,955 - Dshi_1589 0.65 -0.1 1,655,984 - Dshi_1589 0.68 -0.0 1,655,989 + Dshi_1589 0.69 +1.0 1,656,013 + Dshi_1589 0.72 +0.1 1,656,017 - Dshi_1589 0.72 -0.8 1,656,019 + Dshi_1589 0.72 -0.7 1,656,066 + Dshi_1589 0.78 +0.2 1,656,074 - Dshi_1589 0.79 +0.1 1,656,087 - Dshi_1589 0.80 -0.2 1,656,152 - Dshi_1589 0.87 +0.6 1,656,159 + Dshi_1589 0.88 +0.5 1,656,159 + Dshi_1589 0.88 -0.3 1,656,168 - Dshi_1589 0.89 -0.3 1,656,168 - Dshi_1589 0.89 +0.0 1,656,317 - -1.8 1,656,411 + -0.1 1,656,482 + Dshi_1590 0.13 -0.4 1,656,562 - Dshi_1590 0.20 -0.6 1,656,566 - Dshi_1590 0.20 -1.5 1,656,623 + Dshi_1590 0.25 +0.1 1,656,623 + Dshi_1590 0.25 +0.2 1,656,623 + Dshi_1590 0.25 -0.1 1,656,633 + Dshi_1590 0.26 -0.1 1,656,802 - Dshi_1590 0.41 +0.2 1,657,072 - Dshi_1590 0.65 -0.2
Or see this region's nucleotide sequence