Experiment: m.b. Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1298 and Dshi_1299 are separated by 74 nucleotides Dshi_1299 and Dshi_1300 are separated by 143 nucleotides Dshi_1300 and Dshi_1301 are separated by 111 nucleotides
Dshi_1298: Dshi_1298 - hypothetical protein (RefSeq), at 1,352,444 to 1,352,782
_1298
Dshi_1299: Dshi_1299 - OmpW family protein (RefSeq), at 1,352,857 to 1,353,465
_1299
Dshi_1300: Dshi_1300 - Propionyl-CoA carboxylase (RefSeq), at 1,353,609 to 1,355,213
_1300
Dshi_1301: Dshi_1301 - Carbamoyl-phosphate synthase L chain ATP-binding (RefSeq), at 1,355,325 to 1,357,310
_1301
Position (kb)
1353
1354
1355
1356 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1352.616 kb on + strand, within Dshi_1298 at 1352.621 kb on - strand, within Dshi_1298 at 1352.828 kb on + strand at 1352.829 kb on + strand at 1352.855 kb on + strand at 1352.862 kb on - strand at 1352.884 kb on - strand at 1353.095 kb on - strand, within Dshi_1299 at 1353.119 kb on + strand, within Dshi_1299 at 1353.119 kb on + strand, within Dshi_1299 at 1353.369 kb on - strand, within Dshi_1299 at 1353.424 kb on - strand at 1353.674 kb on - strand at 1353.917 kb on + strand, within Dshi_1300 at 1353.952 kb on + strand, within Dshi_1300 at 1354.101 kb on + strand, within Dshi_1300 at 1354.172 kb on + strand, within Dshi_1300 at 1354.188 kb on - strand, within Dshi_1300 at 1354.299 kb on - strand, within Dshi_1300 at 1354.322 kb on - strand, within Dshi_1300 at 1354.540 kb on - strand, within Dshi_1300 at 1354.551 kb on - strand, within Dshi_1300 at 1354.708 kb on - strand, within Dshi_1300 at 1354.953 kb on - strand, within Dshi_1300 at 1354.964 kb on - strand, within Dshi_1300 at 1355.057 kb on - strand at 1355.096 kb on + strand at 1355.137 kb on - strand at 1355.163 kb on + strand at 1355.312 kb on - strand at 1355.383 kb on + strand at 1355.527 kb on - strand, within Dshi_1301 at 1355.545 kb on + strand, within Dshi_1301 at 1355.646 kb on + strand, within Dshi_1301 at 1355.792 kb on + strand, within Dshi_1301 at 1355.800 kb on - strand, within Dshi_1301 at 1355.971 kb on - strand, within Dshi_1301 at 1355.982 kb on - strand, within Dshi_1301
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml remove 1,352,616 + Dshi_1298 0.51 +1.3 1,352,621 - Dshi_1298 0.52 +2.0 1,352,828 + -1.8 1,352,829 + +1.3 1,352,855 + +1.4 1,352,862 - -3.0 1,352,884 - -1.0 1,353,095 - Dshi_1299 0.39 -0.1 1,353,119 + Dshi_1299 0.43 -1.3 1,353,119 + Dshi_1299 0.43 -2.5 1,353,369 - Dshi_1299 0.84 +0.1 1,353,424 - +0.6 1,353,674 - -0.1 1,353,917 + Dshi_1300 0.19 +0.6 1,353,952 + Dshi_1300 0.21 +0.3 1,354,101 + Dshi_1300 0.31 +0.8 1,354,172 + Dshi_1300 0.35 -0.0 1,354,188 - Dshi_1300 0.36 -0.5 1,354,299 - Dshi_1300 0.43 -0.6 1,354,322 - Dshi_1300 0.44 -2.0 1,354,540 - Dshi_1300 0.58 -1.1 1,354,551 - Dshi_1300 0.59 +0.1 1,354,708 - Dshi_1300 0.68 +0.5 1,354,953 - Dshi_1300 0.84 +0.3 1,354,964 - Dshi_1300 0.84 +0.0 1,355,057 - -0.0 1,355,096 + +0.5 1,355,137 - -1.0 1,355,163 + -1.5 1,355,312 - -1.9 1,355,383 + +0.3 1,355,527 - Dshi_1301 0.10 +0.3 1,355,545 + Dshi_1301 0.11 -1.7 1,355,646 + Dshi_1301 0.16 +0.6 1,355,792 + Dshi_1301 0.24 -0.3 1,355,800 - Dshi_1301 0.24 -0.7 1,355,971 - Dshi_1301 0.33 +0.0 1,355,982 - Dshi_1301 0.33 -0.4
Or see this region's nucleotide sequence