Experiment: m.b. Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1256 and Dshi_1257 are separated by 10 nucleotides Dshi_1257 and Dshi_1258 are separated by 45 nucleotides Dshi_1258 and Dshi_1259 are separated by 86 nucleotides
Dshi_1256: Dshi_1256 - Exopolysaccharide synthesis ExoD (RefSeq), at 1,303,304 to 1,303,924
_1256
Dshi_1257: Dshi_1257 - hypothetical protein (RefSeq), at 1,303,935 to 1,304,216
_1257
Dshi_1258: Dshi_1258 - short-chain dehydrogenase/reductase SDR (RefSeq), at 1,304,262 to 1,305,005
_1258
Dshi_1259: Dshi_1259 - heavy metal translocating P-type ATPase (RefSeq), at 1,305,092 to 1,307,596
_1259
Position (kb)
1304
1305
1306 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1303.272 kb on + strand at 1303.303 kb on - strand at 1303.431 kb on - strand, within Dshi_1256 at 1303.535 kb on + strand, within Dshi_1256 at 1303.543 kb on - strand, within Dshi_1256 at 1303.589 kb on - strand, within Dshi_1256 at 1303.589 kb on - strand, within Dshi_1256 at 1303.725 kb on + strand, within Dshi_1256 at 1303.736 kb on + strand, within Dshi_1256 at 1303.744 kb on - strand, within Dshi_1256 at 1303.744 kb on - strand, within Dshi_1256 at 1303.746 kb on + strand, within Dshi_1256 at 1303.853 kb on - strand, within Dshi_1256 at 1303.854 kb on + strand, within Dshi_1256 at 1303.872 kb on + strand at 1303.882 kb on + strand at 1303.890 kb on - strand at 1303.892 kb on + strand at 1303.906 kb on + strand at 1303.921 kb on - strand at 1303.950 kb on - strand at 1303.982 kb on - strand, within Dshi_1257 at 1304.018 kb on - strand, within Dshi_1257 at 1304.018 kb on - strand, within Dshi_1257 at 1304.077 kb on + strand, within Dshi_1257 at 1304.077 kb on + strand, within Dshi_1257 at 1304.262 kb on - strand at 1304.310 kb on + strand at 1304.320 kb on + strand at 1304.377 kb on + strand, within Dshi_1258 at 1304.523 kb on - strand, within Dshi_1258 at 1304.710 kb on + strand, within Dshi_1258 at 1304.837 kb on + strand, within Dshi_1258 at 1304.852 kb on - strand, within Dshi_1258 at 1304.890 kb on - strand, within Dshi_1258 at 1304.917 kb on - strand, within Dshi_1258 at 1304.985 kb on + strand at 1304.993 kb on - strand at 1305.018 kb on + strand at 1305.094 kb on + strand at 1305.101 kb on + strand at 1305.101 kb on + strand at 1305.180 kb on + strand at 1305.456 kb on + strand at 1305.459 kb on + strand, within Dshi_1259 at 1305.539 kb on - strand, within Dshi_1259 at 1305.829 kb on - strand, within Dshi_1259 at 1305.936 kb on + strand, within Dshi_1259 at 1305.997 kb on + strand at 1306.005 kb on - strand, within Dshi_1259
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml remove 1,303,272 + +0.1 1,303,303 - -1.6 1,303,431 - Dshi_1256 0.20 +0.6 1,303,535 + Dshi_1256 0.37 +2.2 1,303,543 - Dshi_1256 0.38 +0.3 1,303,589 - Dshi_1256 0.46 -0.9 1,303,589 - Dshi_1256 0.46 -1.0 1,303,725 + Dshi_1256 0.68 +0.0 1,303,736 + Dshi_1256 0.70 +0.1 1,303,744 - Dshi_1256 0.71 +0.3 1,303,744 - Dshi_1256 0.71 -0.5 1,303,746 + Dshi_1256 0.71 +0.6 1,303,853 - Dshi_1256 0.88 +0.6 1,303,854 + Dshi_1256 0.89 -0.2 1,303,872 + +0.4 1,303,882 + -1.5 1,303,890 - +0.8 1,303,892 + +0.9 1,303,906 + -0.0 1,303,921 - +0.9 1,303,950 - -1.6 1,303,982 - Dshi_1257 0.17 +0.3 1,304,018 - Dshi_1257 0.29 -1.5 1,304,018 - Dshi_1257 0.29 -1.0 1,304,077 + Dshi_1257 0.50 -0.6 1,304,077 + Dshi_1257 0.50 -0.9 1,304,262 - -0.0 1,304,310 + -0.7 1,304,320 + +2.1 1,304,377 + Dshi_1258 0.15 -0.3 1,304,523 - Dshi_1258 0.35 -1.4 1,304,710 + Dshi_1258 0.60 -0.7 1,304,837 + Dshi_1258 0.77 +0.3 1,304,852 - Dshi_1258 0.79 -0.6 1,304,890 - Dshi_1258 0.84 +0.5 1,304,917 - Dshi_1258 0.88 +0.3 1,304,985 + -0.4 1,304,993 - +0.7 1,305,018 + -1.3 1,305,094 + +1.9 1,305,101 + +0.9 1,305,101 + -1.0 1,305,180 + -0.7 1,305,456 + -1.3 1,305,459 + Dshi_1259 0.15 -1.3 1,305,539 - Dshi_1259 0.18 -1.2 1,305,829 - Dshi_1259 0.29 -0.8 1,305,936 + Dshi_1259 0.34 -0.7 1,305,997 + -1.3 1,306,005 - Dshi_1259 0.36 -1.9
Or see this region's nucleotide sequence