Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1258

Experiment: m.b. Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1256 and Dshi_1257 are separated by 10 nucleotidesDshi_1257 and Dshi_1258 are separated by 45 nucleotidesDshi_1258 and Dshi_1259 are separated by 86 nucleotides Dshi_1256: Dshi_1256 - Exopolysaccharide synthesis ExoD (RefSeq), at 1,303,304 to 1,303,924 _1256 Dshi_1257: Dshi_1257 - hypothetical protein (RefSeq), at 1,303,935 to 1,304,216 _1257 Dshi_1258: Dshi_1258 - short-chain dehydrogenase/reductase SDR (RefSeq), at 1,304,262 to 1,305,005 _1258 Dshi_1259: Dshi_1259 - heavy metal translocating P-type ATPase (RefSeq), at 1,305,092 to 1,307,596 _1259 Position (kb) 1304 1305 1306Strain fitness (log2 ratio) -2 -1 0 1 2at 1303.272 kb on + strandat 1303.303 kb on - strandat 1303.431 kb on - strand, within Dshi_1256at 1303.535 kb on + strand, within Dshi_1256at 1303.543 kb on - strand, within Dshi_1256at 1303.589 kb on - strand, within Dshi_1256at 1303.589 kb on - strand, within Dshi_1256at 1303.725 kb on + strand, within Dshi_1256at 1303.736 kb on + strand, within Dshi_1256at 1303.744 kb on - strand, within Dshi_1256at 1303.744 kb on - strand, within Dshi_1256at 1303.746 kb on + strand, within Dshi_1256at 1303.853 kb on - strand, within Dshi_1256at 1303.854 kb on + strand, within Dshi_1256at 1303.872 kb on + strandat 1303.882 kb on + strandat 1303.890 kb on - strandat 1303.892 kb on + strandat 1303.906 kb on + strandat 1303.921 kb on - strandat 1303.950 kb on - strandat 1303.982 kb on - strand, within Dshi_1257at 1304.018 kb on - strand, within Dshi_1257at 1304.018 kb on - strand, within Dshi_1257at 1304.077 kb on + strand, within Dshi_1257at 1304.077 kb on + strand, within Dshi_1257at 1304.262 kb on - strandat 1304.310 kb on + strandat 1304.320 kb on + strandat 1304.377 kb on + strand, within Dshi_1258at 1304.523 kb on - strand, within Dshi_1258at 1304.710 kb on + strand, within Dshi_1258at 1304.837 kb on + strand, within Dshi_1258at 1304.852 kb on - strand, within Dshi_1258at 1304.890 kb on - strand, within Dshi_1258at 1304.917 kb on - strand, within Dshi_1258at 1304.985 kb on + strandat 1304.993 kb on - strandat 1305.018 kb on + strandat 1305.094 kb on + strandat 1305.101 kb on + strandat 1305.101 kb on + strandat 1305.180 kb on + strandat 1305.456 kb on + strandat 1305.459 kb on + strand, within Dshi_1259at 1305.539 kb on - strand, within Dshi_1259at 1305.829 kb on - strand, within Dshi_1259at 1305.936 kb on + strand, within Dshi_1259at 1305.997 kb on + strandat 1306.005 kb on - strand, within Dshi_1259

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
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1,303,272 + +0.1
1,303,303 - -1.6
1,303,431 - Dshi_1256 0.20 +0.6
1,303,535 + Dshi_1256 0.37 +2.2
1,303,543 - Dshi_1256 0.38 +0.3
1,303,589 - Dshi_1256 0.46 -0.9
1,303,589 - Dshi_1256 0.46 -1.0
1,303,725 + Dshi_1256 0.68 +0.0
1,303,736 + Dshi_1256 0.70 +0.1
1,303,744 - Dshi_1256 0.71 +0.3
1,303,744 - Dshi_1256 0.71 -0.5
1,303,746 + Dshi_1256 0.71 +0.6
1,303,853 - Dshi_1256 0.88 +0.6
1,303,854 + Dshi_1256 0.89 -0.2
1,303,872 + +0.4
1,303,882 + -1.5
1,303,890 - +0.8
1,303,892 + +0.9
1,303,906 + -0.0
1,303,921 - +0.9
1,303,950 - -1.6
1,303,982 - Dshi_1257 0.17 +0.3
1,304,018 - Dshi_1257 0.29 -1.5
1,304,018 - Dshi_1257 0.29 -1.0
1,304,077 + Dshi_1257 0.50 -0.6
1,304,077 + Dshi_1257 0.50 -0.9
1,304,262 - -0.0
1,304,310 + -0.7
1,304,320 + +2.1
1,304,377 + Dshi_1258 0.15 -0.3
1,304,523 - Dshi_1258 0.35 -1.4
1,304,710 + Dshi_1258 0.60 -0.7
1,304,837 + Dshi_1258 0.77 +0.3
1,304,852 - Dshi_1258 0.79 -0.6
1,304,890 - Dshi_1258 0.84 +0.5
1,304,917 - Dshi_1258 0.88 +0.3
1,304,985 + -0.4
1,304,993 - +0.7
1,305,018 + -1.3
1,305,094 + +1.9
1,305,101 + +0.9
1,305,101 + -1.0
1,305,180 + -0.7
1,305,456 + -1.3
1,305,459 + Dshi_1259 0.15 -1.3
1,305,539 - Dshi_1259 0.18 -1.2
1,305,829 - Dshi_1259 0.29 -0.8
1,305,936 + Dshi_1259 0.34 -0.7
1,305,997 + -1.3
1,306,005 - Dshi_1259 0.36 -1.9

Or see this region's nucleotide sequence