Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1168

Experiment: m.b. Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1167 and Dshi_1168 are separated by 52 nucleotidesDshi_1168 and Dshi_1169 are separated by 47 nucleotides Dshi_1167: Dshi_1167 - peptidase M48 Ste24p (RefSeq), at 1,196,727 to 1,198,073 _1167 Dshi_1168: Dshi_1168 - aminotransferase class I and II (RefSeq), at 1,198,126 to 1,199,301 _1168 Dshi_1169: Dshi_1169 - N-acetylmuramoyl-L-alanine amidase (RefSeq), at 1,199,349 to 1,200,617 _1169 Position (kb) 1198 1199 1200Strain fitness (log2 ratio) -2 -1 0 1 2at 1197.373 kb on - strand, within Dshi_1167at 1197.407 kb on - strand, within Dshi_1167at 1197.690 kb on - strand, within Dshi_1167at 1197.811 kb on + strand, within Dshi_1167at 1197.843 kb on + strand, within Dshi_1167at 1198.059 kb on - strandat 1198.090 kb on - strandat 1198.102 kb on + strandat 1198.110 kb on - strandat 1198.318 kb on + strand, within Dshi_1168at 1198.318 kb on + strand, within Dshi_1168at 1198.326 kb on - strand, within Dshi_1168at 1198.370 kb on + strand, within Dshi_1168at 1198.378 kb on - strand, within Dshi_1168at 1198.535 kb on + strand, within Dshi_1168at 1198.535 kb on + strand, within Dshi_1168at 1198.706 kb on - strand, within Dshi_1168at 1198.735 kb on - strand, within Dshi_1168at 1199.007 kb on + strand, within Dshi_1168at 1199.113 kb on - strand, within Dshi_1168at 1199.210 kb on - strandat 1199.228 kb on + strandat 1199.432 kb on + strandat 1199.484 kb on + strand, within Dshi_1169at 1199.496 kb on + strand, within Dshi_1169at 1199.535 kb on - strand, within Dshi_1169at 1199.588 kb on - strand, within Dshi_1169at 1199.729 kb on + strand, within Dshi_1169at 1199.767 kb on + strand, within Dshi_1169at 1199.890 kb on - strand, within Dshi_1169at 1199.935 kb on + strand, within Dshi_1169at 1199.997 kb on + strand, within Dshi_1169at 1200.054 kb on - strand, within Dshi_1169at 1200.054 kb on - strand, within Dshi_1169at 1200.092 kb on + strand, within Dshi_1169at 1200.113 kb on - strand, within Dshi_1169

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
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1,197,373 - Dshi_1167 0.48 -1.7
1,197,407 - Dshi_1167 0.50 -1.1
1,197,690 - Dshi_1167 0.71 -0.7
1,197,811 + Dshi_1167 0.80 -0.7
1,197,843 + Dshi_1167 0.83 -0.4
1,198,059 - +0.5
1,198,090 - -0.7
1,198,102 + +0.0
1,198,110 - -1.3
1,198,318 + Dshi_1168 0.16 -0.5
1,198,318 + Dshi_1168 0.16 -2.0
1,198,326 - Dshi_1168 0.17 +0.1
1,198,370 + Dshi_1168 0.21 -0.1
1,198,378 - Dshi_1168 0.21 -0.3
1,198,535 + Dshi_1168 0.35 -0.4
1,198,535 + Dshi_1168 0.35 +0.3
1,198,706 - Dshi_1168 0.49 +1.2
1,198,735 - Dshi_1168 0.52 +1.3
1,199,007 + Dshi_1168 0.75 -0.7
1,199,113 - Dshi_1168 0.84 +0.6
1,199,210 - -0.3
1,199,228 + +1.3
1,199,432 + +0.3
1,199,484 + Dshi_1169 0.11 -0.9
1,199,496 + Dshi_1169 0.12 -0.5
1,199,535 - Dshi_1169 0.15 -1.0
1,199,588 - Dshi_1169 0.19 -0.8
1,199,729 + Dshi_1169 0.30 +0.3
1,199,767 + Dshi_1169 0.33 -0.1
1,199,890 - Dshi_1169 0.43 +0.3
1,199,935 + Dshi_1169 0.46 -1.5
1,199,997 + Dshi_1169 0.51 -1.0
1,200,054 - Dshi_1169 0.56 -1.1
1,200,054 - Dshi_1169 0.56 +0.3
1,200,092 + Dshi_1169 0.59 +1.9
1,200,113 - Dshi_1169 0.60 -1.2

Or see this region's nucleotide sequence