Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1165

Experiment: m.b. Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1163 and Dshi_1164 are separated by 230 nucleotidesDshi_1164 and Dshi_1165 overlap by 14 nucleotidesDshi_1165 and Dshi_1166 are separated by 97 nucleotides Dshi_1163: Dshi_1163 - efflux transporter, RND family, MFP subunit (RefSeq), at 1,191,786 to 1,192,937 _1163 Dshi_1164: Dshi_1164 - hypothetical protein (RefSeq), at 1,193,168 to 1,193,821 _1164 Dshi_1165: Dshi_1165 - Pyrrolo-quinoline quinone (RefSeq), at 1,193,808 to 1,195,160 _1165 Dshi_1166: Dshi_1166 - small GTP-binding protein (RefSeq), at 1,195,258 to 1,196,730 _1166 Position (kb) 1193 1194 1195 1196Strain fitness (log2 ratio) -1 0 1at 1192.837 kb on - strandat 1192.912 kb on + strandat 1192.960 kb on + strandat 1192.970 kb on - strandat 1192.973 kb on - strandat 1192.996 kb on + strandat 1193.046 kb on - strandat 1193.130 kb on + strandat 1193.138 kb on - strandat 1193.346 kb on - strand, within Dshi_1164

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
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1,192,837 - -0.4
1,192,912 + -0.2
1,192,960 + +0.0
1,192,970 - -1.2
1,192,973 - -1.2
1,192,996 + -0.8
1,193,046 - -0.6
1,193,130 + +0.3
1,193,138 - -1.6
1,193,346 - Dshi_1164 0.27 -0.3

Or see this region's nucleotide sequence