Experiment: m.b. Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0826 and Dshi_0827 are separated by 173 nucleotides Dshi_0827 and Dshi_0828 overlap by 4 nucleotides Dshi_0828 and Dshi_0829 overlap by 4 nucleotides
Dshi_0826: Dshi_0826 - malic protein NAD-binding (RefSeq), at 832,910 to 835,189
_0826
Dshi_0827: Dshi_0827 - cytidine deaminase (RefSeq), at 835,363 to 835,755
_0827
Dshi_0828: Dshi_0828 - pyrimidine-nucleoside phosphorylase (RefSeq), at 835,752 to 837,059
_0828
Dshi_0829: Dshi_0829 - Phosphopentomutase (EC 5.4.2.7) <small>(from data)</small>, at 837,056 to 838,255
_0829
Position (kb) 835
836
837
838 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 834.767 kb on - strand, within Dshi_0826 at 834.817 kb on - strand, within Dshi_0826 at 834.817 kb on - strand, within Dshi_0826 at 834.889 kb on + strand, within Dshi_0826 at 834.902 kb on - strand, within Dshi_0826 at 834.921 kb on - strand, within Dshi_0826 at 834.999 kb on - strand at 835.111 kb on + strand at 835.111 kb on + strand at 835.344 kb on - strand at 835.379 kb on - strand at 835.418 kb on - strand, within Dshi_0827 at 835.459 kb on - strand, within Dshi_0827 at 835.469 kb on - strand, within Dshi_0827 at 835.597 kb on - strand, within Dshi_0827 at 835.622 kb on + strand, within Dshi_0827 at 836.098 kb on - strand, within Dshi_0828 at 836.237 kb on + strand, within Dshi_0828 at 836.237 kb on + strand, within Dshi_0828 at 836.330 kb on - strand, within Dshi_0828 at 836.364 kb on - strand, within Dshi_0828 at 836.474 kb on - strand, within Dshi_0828 at 836.621 kb on + strand, within Dshi_0828 at 836.852 kb on + strand, within Dshi_0828 at 836.942 kb on + strand at 836.970 kb on - strand at 837.156 kb on - strand at 837.166 kb on - strand at 837.405 kb on + strand, within Dshi_0829 at 837.490 kb on - strand, within Dshi_0829 at 837.572 kb on + strand, within Dshi_0829 at 837.778 kb on + strand, within Dshi_0829 at 837.892 kb on + strand, within Dshi_0829 at 837.923 kb on + strand, within Dshi_0829 at 838.001 kb on + strand, within Dshi_0829 at 838.022 kb on - strand, within Dshi_0829
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml remove 834,767 - Dshi_0826 0.81 -2.4 834,817 - Dshi_0826 0.84 -0.5 834,817 - Dshi_0826 0.84 -1.2 834,889 + Dshi_0826 0.87 -2.3 834,902 - Dshi_0826 0.87 -3.4 834,921 - Dshi_0826 0.88 -4.3 834,999 - -2.0 835,111 + -0.4 835,111 + -2.6 835,344 - -0.4 835,379 - -0.4 835,418 - Dshi_0827 0.14 +0.5 835,459 - Dshi_0827 0.24 +1.1 835,469 - Dshi_0827 0.27 +0.4 835,597 - Dshi_0827 0.60 -0.5 835,622 + Dshi_0827 0.66 -0.3 836,098 - Dshi_0828 0.26 +0.2 836,237 + Dshi_0828 0.37 -0.7 836,237 + Dshi_0828 0.37 -0.4 836,330 - Dshi_0828 0.44 -0.9 836,364 - Dshi_0828 0.47 +0.7 836,474 - Dshi_0828 0.55 -0.5 836,621 + Dshi_0828 0.66 -0.4 836,852 + Dshi_0828 0.84 +0.7 836,942 + -2.9 836,970 - -0.3 837,156 - +0.3 837,166 - -0.2 837,405 + Dshi_0829 0.29 +0.9 837,490 - Dshi_0829 0.36 -0.8 837,572 + Dshi_0829 0.43 -1.3 837,778 + Dshi_0829 0.60 -0.5 837,892 + Dshi_0829 0.70 -0.1 837,923 + Dshi_0829 0.72 -0.4 838,001 + Dshi_0829 0.79 -3.3 838,022 - Dshi_0829 0.81 +0.9
Or see this region's nucleotide sequence