Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0455

Experiment: m.b. Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0454 and Dshi_0455 are separated by 342 nucleotidesDshi_0455 and Dshi_0456 are separated by 92 nucleotides Dshi_0454: Dshi_0454 - coenzyme PQQ biosynthesis protein E (RefSeq), at 440,580 to 441,686 _0454 Dshi_0455: Dshi_0455 - hypothetical protein (RefSeq), at 442,029 to 442,946 _0455 Dshi_0456: Dshi_0456 - ATPase associated with various cellular activities AAA_3 (RefSeq), at 443,039 to 443,995 _0456 Position (kb) 442 443Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 441.033 kb on - strand, within Dshi_0454at 441.036 kb on + strand, within Dshi_0454at 441.052 kb on + strand, within Dshi_0454at 441.052 kb on + strand, within Dshi_0454at 441.055 kb on - strand, within Dshi_0454at 441.060 kb on - strand, within Dshi_0454at 441.123 kb on + strand, within Dshi_0454at 441.180 kb on - strand, within Dshi_0454at 441.224 kb on + strand, within Dshi_0454at 441.229 kb on + strand, within Dshi_0454at 441.277 kb on + strand, within Dshi_0454at 441.287 kb on + strand, within Dshi_0454at 441.295 kb on - strand, within Dshi_0454at 441.295 kb on - strand, within Dshi_0454at 441.295 kb on - strand, within Dshi_0454at 441.339 kb on + strand, within Dshi_0454at 441.339 kb on + strand, within Dshi_0454at 441.339 kb on + strand, within Dshi_0454at 441.342 kb on - strand, within Dshi_0454at 441.347 kb on - strand, within Dshi_0454at 441.347 kb on - strand, within Dshi_0454at 441.380 kb on - strand, within Dshi_0454at 441.420 kb on + strand, within Dshi_0454at 441.432 kb on + strand, within Dshi_0454at 441.463 kb on - strand, within Dshi_0454at 441.464 kb on - strand, within Dshi_0454at 441.464 kb on - strand, within Dshi_0454at 441.488 kb on + strand, within Dshi_0454at 441.496 kb on - strand, within Dshi_0454at 441.526 kb on - strand, within Dshi_0454at 441.536 kb on + strand, within Dshi_0454at 441.558 kb on + strand, within Dshi_0454at 441.558 kb on + strand, within Dshi_0454at 441.558 kb on + strand, within Dshi_0454at 441.566 kb on - strand, within Dshi_0454at 441.644 kb on - strandat 441.646 kb on + strandat 441.646 kb on + strandat 441.647 kb on + strandat 441.662 kb on - strandat 441.704 kb on - strandat 441.704 kb on - strandat 441.711 kb on + strandat 441.716 kb on + strandat 441.739 kb on + strandat 441.747 kb on - strandat 441.752 kb on - strandat 441.754 kb on + strandat 441.762 kb on - strandat 441.788 kb on + strandat 441.925 kb on - strandat 441.932 kb on + strandat 441.949 kb on + strandat 441.950 kb on - strandat 441.952 kb on - strandat 442.032 kb on - strandat 442.070 kb on + strandat 442.107 kb on - strandat 442.112 kb on + strandat 442.200 kb on + strand, within Dshi_0455at 442.204 kb on + strand, within Dshi_0455at 442.211 kb on + strand, within Dshi_0455at 442.212 kb on - strand, within Dshi_0455at 442.212 kb on - strand, within Dshi_0455at 442.212 kb on - strand, within Dshi_0455at 442.218 kb on - strand, within Dshi_0455at 442.233 kb on - strand, within Dshi_0455at 442.289 kb on - strand, within Dshi_0455at 442.315 kb on + strand, within Dshi_0455at 442.315 kb on + strand, within Dshi_0455at 442.323 kb on - strand, within Dshi_0455at 442.323 kb on - strand, within Dshi_0455at 442.323 kb on - strand, within Dshi_0455at 442.337 kb on + strand, within Dshi_0455at 442.345 kb on - strand, within Dshi_0455at 442.345 kb on - strand, within Dshi_0455at 442.345 kb on - strand, within Dshi_0455at 442.372 kb on + strand, within Dshi_0455at 442.393 kb on - strand, within Dshi_0455at 442.407 kb on + strand, within Dshi_0455at 442.434 kb on + strand, within Dshi_0455at 442.435 kb on + strand, within Dshi_0455at 442.442 kb on - strand, within Dshi_0455at 442.454 kb on - strand, within Dshi_0455at 442.469 kb on + strand, within Dshi_0455at 442.477 kb on - strand, within Dshi_0455at 442.485 kb on + strand, within Dshi_0455at 442.498 kb on - strand, within Dshi_0455at 442.509 kb on + strand, within Dshi_0455at 442.509 kb on + strand, within Dshi_0455at 442.509 kb on + strand, within Dshi_0455at 442.509 kb on + strand, within Dshi_0455at 442.517 kb on - strand, within Dshi_0455at 442.517 kb on - strand, within Dshi_0455at 442.522 kb on + strand, within Dshi_0455at 442.553 kb on + strand, within Dshi_0455at 442.561 kb on - strand, within Dshi_0455at 442.577 kb on + strand, within Dshi_0455at 442.582 kb on - strand, within Dshi_0455at 442.601 kb on + strand, within Dshi_0455at 442.631 kb on + strand, within Dshi_0455at 442.640 kb on - strand, within Dshi_0455at 442.653 kb on + strand, within Dshi_0455at 442.653 kb on + strand, within Dshi_0455at 442.661 kb on - strand, within Dshi_0455at 442.664 kb on + strand, within Dshi_0455at 442.677 kb on - strand, within Dshi_0455at 442.680 kb on + strand, within Dshi_0455at 442.688 kb on - strand, within Dshi_0455at 442.749 kb on - strand, within Dshi_0455at 442.791 kb on - strand, within Dshi_0455at 442.803 kb on + strand, within Dshi_0455at 442.803 kb on + strand, within Dshi_0455at 442.804 kb on + strand, within Dshi_0455at 442.811 kb on - strand, within Dshi_0455at 442.811 kb on - strand, within Dshi_0455at 442.819 kb on - strand, within Dshi_0455at 442.824 kb on - strand, within Dshi_0455at 442.893 kb on - strandat 442.895 kb on + strandat 442.895 kb on + strandat 442.903 kb on - strandat 442.953 kb on + strandat 442.984 kb on - strandat 443.023 kb on + strandat 443.031 kb on - strandat 443.033 kb on + strandat 443.056 kb on - strandat 443.123 kb on - strandat 443.205 kb on - strand, within Dshi_0456at 443.207 kb on + strand, within Dshi_0456at 443.256 kb on - strand, within Dshi_0456at 443.256 kb on - strand, within Dshi_0456at 443.304 kb on + strand, within Dshi_0456at 443.311 kb on + strand, within Dshi_0456at 443.311 kb on + strand, within Dshi_0456at 443.342 kb on + strand, within Dshi_0456at 443.352 kb on + strand, within Dshi_0456at 443.376 kb on + strand, within Dshi_0456at 443.379 kb on - strand, within Dshi_0456at 443.421 kb on - strand, within Dshi_0456at 443.421 kb on - strand, within Dshi_0456at 443.431 kb on + strand, within Dshi_0456at 443.432 kb on - strand, within Dshi_0456at 443.445 kb on - strand, within Dshi_0456at 443.563 kb on + strand, within Dshi_0456at 443.578 kb on + strand, within Dshi_0456at 443.634 kb on - strand, within Dshi_0456at 443.636 kb on + strand, within Dshi_0456at 443.637 kb on + strand, within Dshi_0456at 443.637 kb on + strand, within Dshi_0456at 443.637 kb on + strand, within Dshi_0456at 443.639 kb on - strand, within Dshi_0456at 443.671 kb on - strand, within Dshi_0456at 443.683 kb on - strand, within Dshi_0456at 443.685 kb on + strand, within Dshi_0456at 443.685 kb on + strand, within Dshi_0456at 443.693 kb on - strand, within Dshi_0456at 443.721 kb on + strand, within Dshi_0456at 443.737 kb on + strand, within Dshi_0456at 443.745 kb on - strand, within Dshi_0456at 443.772 kb on + strand, within Dshi_0456at 443.790 kb on + strand, within Dshi_0456at 443.797 kb on + strand, within Dshi_0456at 443.801 kb on + strand, within Dshi_0456at 443.806 kb on + strand, within Dshi_0456at 443.806 kb on + strand, within Dshi_0456at 443.812 kb on + strand, within Dshi_0456at 443.814 kb on - strand, within Dshi_0456at 443.847 kb on + strand, within Dshi_0456at 443.863 kb on + strand, within Dshi_0456at 443.884 kb on - strand, within Dshi_0456at 443.912 kb on + strandat 443.912 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
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441,033 - Dshi_0454 0.41 +0.2
441,036 + Dshi_0454 0.41 -1.4
441,052 + Dshi_0454 0.43 -0.1
441,052 + Dshi_0454 0.43 -0.6
441,055 - Dshi_0454 0.43 -0.2
441,060 - Dshi_0454 0.43 +0.2
441,123 + Dshi_0454 0.49 +1.1
441,180 - Dshi_0454 0.54 +0.7
441,224 + Dshi_0454 0.58 -2.0
441,229 + Dshi_0454 0.59 +0.1
441,277 + Dshi_0454 0.63 -2.1
441,287 + Dshi_0454 0.64 +0.0
441,295 - Dshi_0454 0.65 -2.2
441,295 - Dshi_0454 0.65 -0.8
441,295 - Dshi_0454 0.65 +1.2
441,339 + Dshi_0454 0.69 -2.1
441,339 + Dshi_0454 0.69 -0.0
441,339 + Dshi_0454 0.69 -0.4
441,342 - Dshi_0454 0.69 -2.6
441,347 - Dshi_0454 0.69 +0.3
441,347 - Dshi_0454 0.69 +0.2
441,380 - Dshi_0454 0.72 +0.5
441,420 + Dshi_0454 0.76 -1.2
441,432 + Dshi_0454 0.77 -0.4
441,463 - Dshi_0454 0.80 -4.0
441,464 - Dshi_0454 0.80 +2.7
441,464 - Dshi_0454 0.80 -0.5
441,488 + Dshi_0454 0.82 -0.1
441,496 - Dshi_0454 0.83 -1.0
441,526 - Dshi_0454 0.85 +0.5
441,536 + Dshi_0454 0.86 +0.2
441,558 + Dshi_0454 0.88 +0.3
441,558 + Dshi_0454 0.88 -1.1
441,558 + Dshi_0454 0.88 -0.3
441,566 - Dshi_0454 0.89 -1.4
441,644 - +1.0
441,646 + +0.6
441,646 + -1.4
441,647 + -1.6
441,662 - +0.1
441,704 - +0.4
441,704 - -0.8
441,711 + -0.6
441,716 + +0.3
441,739 + +0.2
441,747 - -0.8
441,752 - -0.3
441,754 + -0.1
441,762 - +1.4
441,788 + -0.8
441,925 - -0.8
441,932 + +1.4
441,949 + -0.4
441,950 - -0.4
441,952 - -0.2
442,032 - +0.3
442,070 + +0.2
442,107 - -0.4
442,112 + -0.5
442,200 + Dshi_0455 0.19 -0.3
442,204 + Dshi_0455 0.19 -0.4
442,211 + Dshi_0455 0.20 -0.2
442,212 - Dshi_0455 0.20 -1.3
442,212 - Dshi_0455 0.20 -0.1
442,212 - Dshi_0455 0.20 -0.9
442,218 - Dshi_0455 0.21 -1.2
442,233 - Dshi_0455 0.22 -0.0
442,289 - Dshi_0455 0.28 -1.6
442,315 + Dshi_0455 0.31 -0.8
442,315 + Dshi_0455 0.31 +0.8
442,323 - Dshi_0455 0.32 -0.0
442,323 - Dshi_0455 0.32 +0.7
442,323 - Dshi_0455 0.32 +0.2
442,337 + Dshi_0455 0.34 +0.0
442,345 - Dshi_0455 0.34 +0.4
442,345 - Dshi_0455 0.34 -1.0
442,345 - Dshi_0455 0.34 -0.6
442,372 + Dshi_0455 0.37 -1.1
442,393 - Dshi_0455 0.40 +0.7
442,407 + Dshi_0455 0.41 -1.4
442,434 + Dshi_0455 0.44 +0.2
442,435 + Dshi_0455 0.44 -2.4
442,442 - Dshi_0455 0.45 -0.7
442,454 - Dshi_0455 0.46 -0.7
442,469 + Dshi_0455 0.48 +0.2
442,477 - Dshi_0455 0.49 -0.5
442,485 + Dshi_0455 0.50 +0.2
442,498 - Dshi_0455 0.51 -0.9
442,509 + Dshi_0455 0.52 -1.2
442,509 + Dshi_0455 0.52 -0.7
442,509 + Dshi_0455 0.52 -1.3
442,509 + Dshi_0455 0.52 +0.2
442,517 - Dshi_0455 0.53 +0.5
442,517 - Dshi_0455 0.53 -1.2
442,522 + Dshi_0455 0.54 -1.4
442,553 + Dshi_0455 0.57 -0.6
442,561 - Dshi_0455 0.58 -0.6
442,577 + Dshi_0455 0.60 -0.7
442,582 - Dshi_0455 0.60 -0.6
442,601 + Dshi_0455 0.62 -1.1
442,631 + Dshi_0455 0.66 -0.8
442,640 - Dshi_0455 0.67 -0.7
442,653 + Dshi_0455 0.68 -1.0
442,653 + Dshi_0455 0.68 -0.3
442,661 - Dshi_0455 0.69 +1.2
442,664 + Dshi_0455 0.69 +0.7
442,677 - Dshi_0455 0.71 -0.4
442,680 + Dshi_0455 0.71 -0.9
442,688 - Dshi_0455 0.72 -0.4
442,749 - Dshi_0455 0.78 +0.1
442,791 - Dshi_0455 0.83 -1.0
442,803 + Dshi_0455 0.84 +0.4
442,803 + Dshi_0455 0.84 -0.8
442,804 + Dshi_0455 0.84 -1.0
442,811 - Dshi_0455 0.85 -0.7
442,811 - Dshi_0455 0.85 -1.2
442,819 - Dshi_0455 0.86 -0.2
442,824 - Dshi_0455 0.87 -1.9
442,893 - -0.4
442,895 + +0.5
442,895 + +0.4
442,903 - +1.4
442,953 + -0.4
442,984 - +0.2
443,023 + -0.3
443,031 - -0.8
443,033 + +0.4
443,056 - +0.3
443,123 - -2.2
443,205 - Dshi_0456 0.17 +0.7
443,207 + Dshi_0456 0.18 -2.1
443,256 - Dshi_0456 0.23 -0.5
443,256 - Dshi_0456 0.23 +1.5
443,304 + Dshi_0456 0.28 -0.6
443,311 + Dshi_0456 0.28 -0.6
443,311 + Dshi_0456 0.28 -0.8
443,342 + Dshi_0456 0.32 +0.4
443,352 + Dshi_0456 0.33 -2.5
443,376 + Dshi_0456 0.35 +0.7
443,379 - Dshi_0456 0.36 +0.7
443,421 - Dshi_0456 0.40 -0.8
443,421 - Dshi_0456 0.40 -0.3
443,431 + Dshi_0456 0.41 -0.7
443,432 - Dshi_0456 0.41 -1.1
443,445 - Dshi_0456 0.42 -0.2
443,563 + Dshi_0456 0.55 +0.4
443,578 + Dshi_0456 0.56 +0.2
443,634 - Dshi_0456 0.62 -0.3
443,636 + Dshi_0456 0.62 +0.1
443,637 + Dshi_0456 0.62 -0.6
443,637 + Dshi_0456 0.62 +0.1
443,637 + Dshi_0456 0.62 -1.4
443,639 - Dshi_0456 0.63 -0.0
443,671 - Dshi_0456 0.66 -1.8
443,683 - Dshi_0456 0.67 -0.2
443,685 + Dshi_0456 0.68 +0.6
443,685 + Dshi_0456 0.68 -0.8
443,693 - Dshi_0456 0.68 -0.3
443,721 + Dshi_0456 0.71 -0.1
443,737 + Dshi_0456 0.73 +0.0
443,745 - Dshi_0456 0.74 -1.4
443,772 + Dshi_0456 0.77 -1.8
443,790 + Dshi_0456 0.78 +0.3
443,797 + Dshi_0456 0.79 -1.4
443,801 + Dshi_0456 0.80 -1.8
443,806 + Dshi_0456 0.80 +0.2
443,806 + Dshi_0456 0.80 -0.3
443,812 + Dshi_0456 0.81 +0.4
443,814 - Dshi_0456 0.81 +0.6
443,847 + Dshi_0456 0.84 -2.2
443,863 + Dshi_0456 0.86 -0.7
443,884 - Dshi_0456 0.88 -0.7
443,912 + +1.0
443,912 + -0.4

Or see this region's nucleotide sequence