Experiment: m.b. Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0136 and Dshi_0137 overlap by 4 nucleotides Dshi_0137 and Dshi_0138 are separated by 22 nucleotides Dshi_0138 and Dshi_0139 overlap by 4 nucleotides
Dshi_0136: Dshi_0136 - glycerophosphoryl diester phosphodiesterase (RefSeq), at 134,622 to 135,395
_0136
Dshi_0137: Dshi_0137 - Endoribonuclease L-PSP (RefSeq), at 135,392 to 135,859
_0137
Dshi_0138: Dshi_0138 - type I secretion membrane fusion protein, HlyD family (RefSeq), at 135,882 to 137,189
_0138
Dshi_0139: Dshi_0139 - type I secretion system ATPase (RefSeq), at 137,186 to 138,925
_0139
Position (kb) 135
136
137
138 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 134.922 kb on - strand, within Dshi_0136 at 134.991 kb on - strand, within Dshi_0136 at 135.012 kb on - strand, within Dshi_0136 at 135.098 kb on - strand, within Dshi_0136 at 135.227 kb on + strand, within Dshi_0136 at 135.381 kb on - strand at 135.584 kb on - strand, within Dshi_0137 at 135.698 kb on - strand, within Dshi_0137 at 135.739 kb on + strand, within Dshi_0137 at 135.814 kb on + strand at 135.820 kb on + strand at 135.833 kb on - strand at 135.890 kb on + strand at 135.993 kb on - strand at 136.012 kb on - strand at 136.058 kb on - strand, within Dshi_0138 at 136.225 kb on + strand, within Dshi_0138 at 136.251 kb on - strand, within Dshi_0138 at 136.251 kb on - strand, within Dshi_0138 at 136.347 kb on - strand, within Dshi_0138 at 136.492 kb on + strand, within Dshi_0138 at 136.527 kb on - strand, within Dshi_0138 at 136.566 kb on + strand, within Dshi_0138 at 136.585 kb on - strand, within Dshi_0138 at 136.724 kb on + strand, within Dshi_0138 at 136.741 kb on + strand, within Dshi_0138 at 136.781 kb on + strand, within Dshi_0138 at 136.781 kb on + strand, within Dshi_0138 at 136.980 kb on - strand, within Dshi_0138 at 137.258 kb on - strand at 137.479 kb on - strand, within Dshi_0139 at 137.496 kb on - strand, within Dshi_0139 at 137.607 kb on + strand, within Dshi_0139 at 137.644 kb on - strand, within Dshi_0139 at 137.934 kb on - strand, within Dshi_0139 at 137.963 kb on - strand, within Dshi_0139 at 138.059 kb on + strand, within Dshi_0139 at 138.060 kb on - strand, within Dshi_0139
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml remove 134,922 - Dshi_0136 0.39 -0.8 134,991 - Dshi_0136 0.48 -2.2 135,012 - Dshi_0136 0.50 -1.3 135,098 - Dshi_0136 0.61 -0.9 135,227 + Dshi_0136 0.78 -0.6 135,381 - -1.1 135,584 - Dshi_0137 0.41 +0.2 135,698 - Dshi_0137 0.65 +0.5 135,739 + Dshi_0137 0.74 -0.2 135,814 + -0.5 135,820 + -3.1 135,833 - -1.5 135,890 + +0.7 135,993 - +0.1 136,012 - -0.4 136,058 - Dshi_0138 0.13 +0.3 136,225 + Dshi_0138 0.26 -0.6 136,251 - Dshi_0138 0.28 +0.1 136,251 - Dshi_0138 0.28 +0.4 136,347 - Dshi_0138 0.36 +0.5 136,492 + Dshi_0138 0.47 -0.2 136,527 - Dshi_0138 0.49 +0.5 136,566 + Dshi_0138 0.52 +0.3 136,585 - Dshi_0138 0.54 +1.5 136,724 + Dshi_0138 0.64 +0.3 136,741 + Dshi_0138 0.66 -0.3 136,781 + Dshi_0138 0.69 +0.9 136,781 + Dshi_0138 0.69 +1.1 136,980 - Dshi_0138 0.84 -0.4 137,258 - +1.1 137,479 - Dshi_0139 0.17 +0.1 137,496 - Dshi_0139 0.18 -0.9 137,607 + Dshi_0139 0.24 -0.9 137,644 - Dshi_0139 0.26 -0.4 137,934 - Dshi_0139 0.43 -0.2 137,963 - Dshi_0139 0.45 +0.3 138,059 + Dshi_0139 0.50 -0.4 138,060 - Dshi_0139 0.50 -0.5
Or see this region's nucleotide sequence