Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0135

Experiment: m.b. Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0133 and Dshi_0134 overlap by 4 nucleotidesDshi_0134 and Dshi_0135 overlap by 1 nucleotidesDshi_0135 and Dshi_0136 are separated by 50 nucleotidesDshi_0136 and Dshi_0137 overlap by 4 nucleotides Dshi_0133: Dshi_0133 - type I secretion target repeat protein (RefSeq), at 132,102 to 133,061 _0133 Dshi_0134: Dshi_0134 - transcriptional coactivator/pterin dehydratase (RefSeq), at 133,058 to 133,351 _0134 Dshi_0135: Dshi_0135 - protein of unknown function DUF482 (RefSeq), at 133,351 to 134,571 _0135 Dshi_0136: Dshi_0136 - glycerophosphoryl diester phosphodiesterase (RefSeq), at 134,622 to 135,395 _0136 Dshi_0137: Dshi_0137 - Endoribonuclease L-PSP (RefSeq), at 135,392 to 135,859 _0137 Position (kb) 133 134 135Strain fitness (log2 ratio) -2 -1 0 1 2at 132.357 kb on + strand, within Dshi_0133at 132.727 kb on + strand, within Dshi_0133at 132.782 kb on + strand, within Dshi_0133at 132.795 kb on + strand, within Dshi_0133at 132.805 kb on + strand, within Dshi_0133at 132.839 kb on - strand, within Dshi_0133at 133.092 kb on + strand, within Dshi_0134at 133.191 kb on + strand, within Dshi_0134at 133.298 kb on + strand, within Dshi_0134at 133.298 kb on + strand, within Dshi_0134at 133.349 kb on + strandat 133.380 kb on + strandat 133.380 kb on + strandat 133.552 kb on - strand, within Dshi_0135at 133.634 kb on - strand, within Dshi_0135at 133.635 kb on + strand, within Dshi_0135at 133.635 kb on + strand, within Dshi_0135at 133.645 kb on - strand, within Dshi_0135at 133.711 kb on + strand, within Dshi_0135at 133.712 kb on + strand, within Dshi_0135at 133.781 kb on + strand, within Dshi_0135at 133.896 kb on - strand, within Dshi_0135at 134.095 kb on + strand, within Dshi_0135at 134.103 kb on - strand, within Dshi_0135at 134.116 kb on - strand, within Dshi_0135at 134.137 kb on + strand, within Dshi_0135at 134.178 kb on + strand, within Dshi_0135at 134.178 kb on + strand, within Dshi_0135at 134.215 kb on - strand, within Dshi_0135at 134.215 kb on - strand, within Dshi_0135at 134.236 kb on + strand, within Dshi_0135at 134.331 kb on + strand, within Dshi_0135at 134.339 kb on - strand, within Dshi_0135at 134.485 kb on - strandat 134.603 kb on - strandat 134.779 kb on - strand, within Dshi_0136at 134.922 kb on - strand, within Dshi_0136at 134.991 kb on - strand, within Dshi_0136at 135.012 kb on - strand, within Dshi_0136at 135.098 kb on - strand, within Dshi_0136at 135.227 kb on + strand, within Dshi_0136at 135.381 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
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132,357 + Dshi_0133 0.27 -0.2
132,727 + Dshi_0133 0.65 -0.9
132,782 + Dshi_0133 0.71 -0.3
132,795 + Dshi_0133 0.72 +0.6
132,805 + Dshi_0133 0.73 -0.1
132,839 - Dshi_0133 0.77 -1.3
133,092 + Dshi_0134 0.12 +0.1
133,191 + Dshi_0134 0.45 +0.3
133,298 + Dshi_0134 0.82 -0.2
133,298 + Dshi_0134 0.82 +0.4
133,349 + -0.3
133,380 + -1.1
133,380 + +0.1
133,552 - Dshi_0135 0.16 +2.1
133,634 - Dshi_0135 0.23 +0.3
133,635 + Dshi_0135 0.23 +0.1
133,635 + Dshi_0135 0.23 -0.1
133,645 - Dshi_0135 0.24 -0.3
133,711 + Dshi_0135 0.29 +0.8
133,712 + Dshi_0135 0.30 +0.7
133,781 + Dshi_0135 0.35 +0.1
133,896 - Dshi_0135 0.45 -0.0
134,095 + Dshi_0135 0.61 +0.5
134,103 - Dshi_0135 0.62 -1.5
134,116 - Dshi_0135 0.63 -0.3
134,137 + Dshi_0135 0.64 -0.2
134,178 + Dshi_0135 0.68 +0.0
134,178 + Dshi_0135 0.68 +0.9
134,215 - Dshi_0135 0.71 +1.1
134,215 - Dshi_0135 0.71 -0.1
134,236 + Dshi_0135 0.72 -0.5
134,331 + Dshi_0135 0.80 +0.4
134,339 - Dshi_0135 0.81 -0.9
134,485 - -0.4
134,603 - +0.4
134,779 - Dshi_0136 0.20 -1.3
134,922 - Dshi_0136 0.39 -0.8
134,991 - Dshi_0136 0.48 -2.2
135,012 - Dshi_0136 0.50 -1.3
135,098 - Dshi_0136 0.61 -0.9
135,227 + Dshi_0136 0.78 -0.6
135,381 - -1.1

Or see this region's nucleotide sequence