Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0086

Experiment: m.b. Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0085 and Dshi_0086 are separated by 311 nucleotidesDshi_0086 and Dshi_0087 are separated by 198 nucleotidesDshi_0087 and Dshi_0088 are separated by 18 nucleotides Dshi_0085: Dshi_0085 - 3-isopropylmalate dehydratase, large subunit (RefSeq), at 83,697 to 85,100 _0085 Dshi_0086: Dshi_0086 - SOUL heme-binding protein (RefSeq), at 85,412 to 86,014 _0086 Dshi_0087: Dshi_0087 - iojap-like protein (RefSeq), at 86,213 to 86,545 _0087 Dshi_0088: Dshi_0088 - protein of unknown function DUF163 (RefSeq), at 86,564 to 87,034 _0088 Position (kb) 85 86 87Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 85.053 kb on + strandat 85.292 kb on - strandat 85.305 kb on - strandat 85.319 kb on - strandat 85.333 kb on - strandat 85.333 kb on - strandat 85.366 kb on + strandat 85.367 kb on + strandat 85.374 kb on - strandat 85.378 kb on + strandat 85.427 kb on + strandat 85.433 kb on + strandat 85.446 kb on + strandat 85.465 kb on + strandat 85.562 kb on + strand, within Dshi_0086at 85.586 kb on + strand, within Dshi_0086at 85.656 kb on + strand, within Dshi_0086at 85.656 kb on + strand, within Dshi_0086at 85.666 kb on + strand, within Dshi_0086at 85.674 kb on - strand, within Dshi_0086at 85.683 kb on + strand, within Dshi_0086at 85.750 kb on + strand, within Dshi_0086at 85.815 kb on - strand, within Dshi_0086at 85.836 kb on - strand, within Dshi_0086at 85.843 kb on + strand, within Dshi_0086at 85.917 kb on + strand, within Dshi_0086at 85.917 kb on + strand, within Dshi_0086at 85.917 kb on + strand, within Dshi_0086at 85.925 kb on - strand, within Dshi_0086at 85.925 kb on - strand, within Dshi_0086at 85.925 kb on - strand, within Dshi_0086at 85.925 kb on - strand, within Dshi_0086at 85.925 kb on - strand, within Dshi_0086at 85.925 kb on - strand, within Dshi_0086at 85.925 kb on - strand, within Dshi_0086at 85.925 kb on - strand, within Dshi_0086at 85.925 kb on - strand, within Dshi_0086at 85.925 kb on - strand, within Dshi_0086at 85.971 kb on - strandat 85.972 kb on + strandat 85.980 kb on - strandat 85.980 kb on - strandat 85.994 kb on + strandat 86.033 kb on - strandat 86.052 kb on + strandat 86.055 kb on - strandat 86.081 kb on - strandat 86.205 kb on - strandat 86.244 kb on - strandat 86.246 kb on - strandat 86.247 kb on + strand, within Dshi_0087at 86.247 kb on + strand, within Dshi_0087at 86.255 kb on - strand, within Dshi_0087at 86.257 kb on + strand, within Dshi_0087at 86.257 kb on + strand, within Dshi_0087at 86.257 kb on + strand, within Dshi_0087at 86.257 kb on + strand, within Dshi_0087at 86.257 kb on + strand, within Dshi_0087at 86.265 kb on - strand, within Dshi_0087at 86.265 kb on - strand, within Dshi_0087at 86.265 kb on - strand, within Dshi_0087at 86.288 kb on - strand, within Dshi_0087at 86.314 kb on + strand, within Dshi_0087at 86.322 kb on - strand, within Dshi_0087at 86.383 kb on + strand, within Dshi_0087at 86.383 kb on + strand, within Dshi_0087at 86.391 kb on - strand, within Dshi_0087at 86.391 kb on - strand, within Dshi_0087at 86.402 kb on - strand, within Dshi_0087at 86.414 kb on + strand, within Dshi_0087at 86.419 kb on + strand, within Dshi_0087at 86.420 kb on + strand, within Dshi_0087at 86.426 kb on + strand, within Dshi_0087at 86.439 kb on - strand, within Dshi_0087at 86.496 kb on + strand, within Dshi_0087at 86.542 kb on - strandat 86.611 kb on - strand, within Dshi_0088at 86.709 kb on - strand, within Dshi_0088at 86.745 kb on + strand, within Dshi_0088at 86.753 kb on - strand, within Dshi_0088at 86.777 kb on + strand, within Dshi_0088at 86.823 kb on + strand, within Dshi_0088at 86.863 kb on - strand, within Dshi_0088at 86.877 kb on + strand, within Dshi_0088at 86.991 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
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85,053 + +0.7
85,292 - +0.9
85,305 - -1.0
85,319 - +0.1
85,333 - -2.9
85,333 - +1.4
85,366 + +0.6
85,367 + -0.1
85,374 - -0.3
85,378 + +0.9
85,427 + -0.5
85,433 + +0.4
85,446 + +1.0
85,465 + -0.1
85,562 + Dshi_0086 0.25 -0.3
85,586 + Dshi_0086 0.29 -2.2
85,656 + Dshi_0086 0.40 +0.7
85,656 + Dshi_0086 0.40 -0.6
85,666 + Dshi_0086 0.42 -0.7
85,674 - Dshi_0086 0.43 -1.2
85,683 + Dshi_0086 0.45 -1.0
85,750 + Dshi_0086 0.56 -0.7
85,815 - Dshi_0086 0.67 -0.2
85,836 - Dshi_0086 0.70 -0.5
85,843 + Dshi_0086 0.71 +2.7
85,917 + Dshi_0086 0.84 -2.5
85,917 + Dshi_0086 0.84 -0.2
85,917 + Dshi_0086 0.84 -0.2
85,925 - Dshi_0086 0.85 +0.6
85,925 - Dshi_0086 0.85 +0.1
85,925 - Dshi_0086 0.85 -1.5
85,925 - Dshi_0086 0.85 -1.5
85,925 - Dshi_0086 0.85 +0.2
85,925 - Dshi_0086 0.85 +1.1
85,925 - Dshi_0086 0.85 -0.6
85,925 - Dshi_0086 0.85 +0.4
85,925 - Dshi_0086 0.85 +0.1
85,925 - Dshi_0086 0.85 +0.4
85,971 - +0.4
85,972 + -1.1
85,980 - -0.2
85,980 - -1.1
85,994 + -0.6
86,033 - -1.5
86,052 + -0.5
86,055 - -0.2
86,081 - +0.0
86,205 - -0.1
86,244 - +0.8
86,246 - -1.2
86,247 + Dshi_0087 0.10 -0.9
86,247 + Dshi_0087 0.10 -0.9
86,255 - Dshi_0087 0.13 +0.8
86,257 + Dshi_0087 0.13 -2.9
86,257 + Dshi_0087 0.13 +0.3
86,257 + Dshi_0087 0.13 -0.3
86,257 + Dshi_0087 0.13 +0.1
86,257 + Dshi_0087 0.13 -1.9
86,265 - Dshi_0087 0.16 +0.1
86,265 - Dshi_0087 0.16 -0.2
86,265 - Dshi_0087 0.16 -1.0
86,288 - Dshi_0087 0.23 -0.8
86,314 + Dshi_0087 0.30 -0.2
86,322 - Dshi_0087 0.33 -2.5
86,383 + Dshi_0087 0.51 +0.3
86,383 + Dshi_0087 0.51 +0.4
86,391 - Dshi_0087 0.53 +0.6
86,391 - Dshi_0087 0.53 +0.8
86,402 - Dshi_0087 0.57 +0.1
86,414 + Dshi_0087 0.60 +0.8
86,419 + Dshi_0087 0.62 -0.2
86,420 + Dshi_0087 0.62 -0.8
86,426 + Dshi_0087 0.64 +0.2
86,439 - Dshi_0087 0.68 +0.1
86,496 + Dshi_0087 0.85 -1.2
86,542 - -0.9
86,611 - Dshi_0088 0.10 +0.3
86,709 - Dshi_0088 0.31 +0.2
86,745 + Dshi_0088 0.38 +0.1
86,753 - Dshi_0088 0.40 -0.5
86,777 + Dshi_0088 0.45 +0.1
86,823 + Dshi_0088 0.55 -2.5
86,863 - Dshi_0088 0.63 -0.5
86,877 + Dshi_0088 0.66 -2.6
86,991 - +1.1

Or see this region's nucleotide sequence