Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3531

Experiment: BHIS with Ceftazidime 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Ceftazidime 0.5 mg/ml
4,565,672	-		BT3530	0.53	+0.8
4,565,767	+		BT3530	0.58	-1.7
4,565,828	+		BT3530	0.61	-3.5
4,566,109	+		BT3530	0.76	-1.4
4,566,110	-		BT3530	0.76	+0.0
4,566,110	-		BT3530	0.76	+1.0
4,566,110	-		BT3530	0.76	-0.9
4,566,187	-		BT3530	0.80	-2.6
4,566,189	+		BT3530	0.80	+0.9
4,566,189	+		BT3530	0.80	+3.1
4,566,221	-		BT3530	0.81	-1.2
4,566,221	-		BT3530	0.81	+0.0
4,566,224	+		BT3530	0.81	+1.2
4,566,245	-		BT3530	0.83	-0.3
4,566,290	+		BT3530	0.85	+1.8
4,566,292	+		BT3530	0.85	-0.3
4,566,292	+		BT3530	0.85	-2.4
4,566,360	-		BT3530	0.88	-1.4
4,566,418	-				+0.8
4,566,418	-				-1.7
4,566,445	-				+0.8
4,566,449	-				+1.5
4,566,533	-				+0.5
4,566,573	-				-1.4
4,566,574	+				-1.6
4,566,578	+				+0.8
4,566,623	+				-0.7
4,566,665	+				-2.7
4,566,703	+				-0.2
4,566,745	+				-0.6
4,566,827	+				-1.6
4,567,027	-		BT3531	0.19	+0.6
4,567,081	+		BT3531	0.21	+0.4
4,567,082	-		BT3531	0.21	+0.2
4,567,107	+		BT3531	0.22	-1.2
4,567,185	+		BT3531	0.26	-1.9
4,567,186	-		BT3531	0.26	-0.6
4,567,186	-		BT3531	0.26	-3.0
4,567,189	-		BT3531	0.26	+0.5
4,567,194	+		BT3531	0.27	+1.5
4,567,194	+		BT3531	0.27	-1.1
4,567,234	-		BT3531	0.29	-0.1
4,567,281	+		BT3531	0.31	+1.4
4,567,282	-		BT3531	0.31	-2.4
4,567,333	-		BT3531	0.33	-1.7
4,567,335	-		BT3531	0.33	-0.6
4,567,471	-		BT3531	0.40	+1.8
4,567,473	+		BT3531	0.40	+0.6
4,567,473	+		BT3531	0.40	-1.9
4,567,476	-		BT3531	0.40	+1.8
4,567,512	+		BT3531	0.42	+0.9
4,567,512	+		BT3531	0.42	+1.4
4,567,513	-		BT3531	0.42	+0.5
4,567,519	+		BT3531	0.42	+0.3
4,567,519	+		BT3531	0.42	+0.3
4,567,520	-		BT3531	0.42	-0.1
4,567,598	+		BT3531	0.46	-0.0
4,567,599	-		BT3531	0.46	-1.6
4,567,669	+		BT3531	0.50	+1.0
4,567,711	+		BT3531	0.52	-1.2
4,567,712	-		BT3531	0.52	+0.5
4,567,726	-		BT3531	0.52	-0.9
4,567,784	+		BT3531	0.55	+0.9
4,567,785	-		BT3531	0.55	-0.5
4,567,877	+		BT3531	0.60	+3.8
4,567,878	-		BT3531	0.60	-2.6
4,567,956	+		BT3531	0.64	-0.3
4,567,957	-		BT3531	0.64	-1.1
4,567,957	-		BT3531	0.64	+0.3
4,568,021	+		BT3531	0.67	+0.9
4,568,022	-		BT3531	0.67	-0.2
4,568,162	-		BT3531	0.73	-0.1
4,568,172	+		BT3531	0.74	+0.2
4,568,180	+		BT3531	0.74	-2.5
4,568,180	+		BT3531	0.74	-1.4
4,568,181	-		BT3531	0.74	-3.1
4,568,181	-		BT3531	0.74	-2.2
4,568,212	+		BT3531	0.76	+0.8
4,568,246	+		BT3531	0.78	+1.8
4,568,247	-		BT3531	0.78	-3.5
4,568,262	-		BT3531	0.78	-1.8
4,568,273	-		BT3531	0.79	-0.1
4,568,273	-		BT3531	0.79	-0.8
4,568,284	-		BT3531	0.79	-0.5
4,568,300	-		BT3531	0.80	+0.9
4,568,300	-		BT3531	0.80	-0.4
4,568,322	+		BT3531	0.81	+0.2
4,568,322	+		BT3531	0.81	-0.8
4,568,325	-		BT3531	0.81	-0.3
4,568,400	-		BT3531	0.85	-2.1
4,568,417	+		BT3531	0.86	-1.3
4,568,418	-		BT3531	0.86	+1.8
4,568,443	+		BT3531	0.87	-1.0
4,568,550	-				+2.0
4,568,645	+				-0.2
4,568,646	-				+0.8
4,568,697	-				-1.3
4,568,728	-				-0.8
4,568,742	+				-1.1
4,568,770	+				-1.8
4,568,771	-				+0.3
4,568,897	-				+0.2
4,568,897	-				+0.5
4,568,901	+				-0.2
4,568,902	-				-0.3
4,568,902	-				+0.5
4,568,903	+				-0.0
4,568,907	-				+0.6
4,568,910	-				-0.8
4,568,914	-				-1.2
4,568,963	+				+2.3
4,568,974	-				-0.6
4,568,974	-				-2.0
4,569,035	+				+0.8
4,569,035	+				+1.4
4,569,035	+				+0.2
4,569,035	+				+0.3
4,569,036	-				-1.4
4,569,059	-		BT3532	0.12	-0.1
4,569,156	-		BT3532	0.21	+0.3
4,569,181	-		BT3532	0.23	+1.5
4,569,191	-		BT3532	0.24	-1.1
4,569,192	+		BT3532	0.24	-2.8
4,569,301	+		BT3532	0.33	-1.6
4,569,302	-		BT3532	0.33	-0.1
4,569,391	+		BT3532	0.41	+0.8
4,569,392	-		BT3532	0.41	-1.7
4,569,466	-		BT3532	0.48	+0.4
4,569,511	-		BT3532	0.52	-0.4
4,569,519	+		BT3532	0.53	+0.8
4,569,520	-		BT3532	0.53	-0.8
4,569,536	-		BT3532	0.54	-1.9
4,569,602	-		BT3532	0.60	-2.4
4,569,702	+		BT3532	0.69	-0.1