Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3079

Experiment: BHIS with Ceftazidime 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Ceftazidime 0.5 mg/ml
3,902,513	+				-1.6
3,902,523	+				-1.5
3,902,523	+				-0.4
3,902,539	+				-2.0
3,902,542	+				-1.1
3,902,542	+				-4.4
3,902,546	-				-1.0
3,902,595	+				-0.2
3,902,595	+				+1.8
3,902,596	-				-0.2
3,902,648	-				-1.2
3,902,660	+				-2.1
3,902,708	+				-1.3
3,902,734	+		BT3078	0.15	-3.1
3,902,763	+		BT3078	0.21	-2.0
3,902,763	+		BT3078	0.21	+0.6
3,902,764	-		BT3078	0.21	-0.2
3,902,764	-		BT3078	0.21	-1.7
3,902,767	+		BT3078	0.21	-1.4
3,902,768	-		BT3078	0.22	-1.5
3,902,774	+		BT3078	0.23	+0.8
3,902,774	+		BT3078	0.23	-1.3
3,902,867	+		BT3078	0.42	-1.6
3,902,915	-		BT3078	0.52	+0.3
3,902,925	+		BT3078	0.54	-0.9
3,902,926	-		BT3078	0.55	-0.5
3,902,926	-		BT3078	0.55	-0.2
3,902,931	-		BT3078	0.56	-1.2
3,902,965	+		BT3078	0.63	+1.4
3,902,982	-		BT3078	0.66	-0.0
3,903,011	+		BT3078	0.72	+1.8
3,903,012	-		BT3078	0.72	-0.3
3,903,197	+				-1.2
3,903,198	-				-1.2
3,903,217	+				-0.7
3,903,218	-				-1.3
3,903,220	+				-0.7
3,903,221	-				+0.1
3,903,239	+				-1.8
3,903,240	-				+0.3
3,903,240	-				-1.2
3,903,240	-				-2.6
3,903,258	+				+0.0
3,903,258	+				-0.5
3,903,259	-				-1.0
3,903,308	+				-0.1
3,903,309	-				-2.0
3,903,310	+				+0.3
3,903,320	+				-1.0
3,903,321	-				-0.8
3,903,327	-				-0.1
3,903,347	-				-0.3
3,903,351	-				-2.3
3,903,385	+				+0.3
3,903,386	-				-0.7
3,903,421	+				-0.5
3,903,429	+				-2.4
3,903,454	-				-0.4
3,903,472	+				-2.2
3,903,472	+				-1.0
3,903,472	+				-0.4
3,903,473	-				-0.8
3,903,473	-				+2.2
3,903,476	+				-0.6
3,903,476	+				-1.2
3,903,493	+				+1.2
3,903,494	-				-0.8
3,903,494	-				-0.7
3,903,507	+		BT3079	0.11	-0.2
3,903,507	+		BT3079	0.11	-1.0
3,903,549	+		BT3079	0.13	-1.2
3,903,642	+		BT3079	0.18	+0.3
3,903,650	+		BT3079	0.19	-2.2
3,903,650	+		BT3079	0.19	-1.9
3,903,688	-		BT3079	0.21	+1.2
3,903,693	-		BT3079	0.21	-0.6
3,903,693	-		BT3079	0.21	-0.2
3,903,693	-		BT3079	0.21	-2.3
3,903,693	-		BT3079	0.21	-1.5
3,903,696	+		BT3079	0.21	-0.1
3,903,697	-		BT3079	0.21	-0.5
3,903,697	-		BT3079	0.21	-0.4
3,903,747	+		BT3079	0.24	-0.6
3,903,763	-		BT3079	0.25	-1.8
3,903,796	-		BT3079	0.27	+0.3
3,903,812	+		BT3079	0.28	-2.0
3,903,816	+		BT3079	0.28	+0.8
3,903,852	+		BT3079	0.30	-2.0
3,903,862	-		BT3079	0.31	-1.5
3,903,895	-		BT3079	0.33	+1.8
3,903,934	+		BT3079	0.35	+0.5
3,903,996	+		BT3079	0.38	-0.1
3,904,034	-		BT3079	0.40	-1.5
3,904,052	+		BT3079	0.41	+1.1
3,904,053	-		BT3079	0.42	-0.1
3,904,064	+		BT3079	0.42	-0.7
3,904,064	+		BT3079	0.42	-3.4
3,904,065	-		BT3079	0.42	-0.5
3,904,117	-		BT3079	0.45	-2.3
3,904,152	+		BT3079	0.47	+0.3
3,904,165	-		BT3079	0.48	+0.6
3,904,173	+		BT3079	0.48	-0.4
3,904,187	-		BT3079	0.49	+2.5
3,904,187	-		BT3079	0.49	-1.3
3,904,189	+		BT3079	0.49	-1.4
3,904,313	+		BT3079	0.56	-2.0
3,904,313	+		BT3079	0.56	-2.6
3,904,313	+		BT3079	0.56	-1.7
3,904,313	+		BT3079	0.56	-0.0
3,904,314	-		BT3079	0.56	-1.5
3,904,314	-		BT3079	0.56	-2.8
3,904,314	-		BT3079	0.56	-0.2
3,904,314	-		BT3079	0.56	-2.1
3,904,362	-		BT3079	0.59	+0.4
3,904,371	+		BT3079	0.60	-2.5
3,904,378	+		BT3079	0.60	-2.4
3,904,389	+		BT3079	0.61	+0.2
3,904,432	-		BT3079	0.63	-1.0
3,904,537	+		BT3079	0.69	-1.4
3,904,546	+		BT3079	0.70	-1.6
3,904,546	+		BT3079	0.70	+1.8
3,904,546	+		BT3079	0.70	-0.7
3,904,547	-		BT3079	0.70	-2.0
3,904,608	-		BT3079	0.73	-1.7
3,904,615	+		BT3079	0.73	-0.7
3,904,615	+		BT3079	0.73	-2.4
3,904,620	+		BT3079	0.74	-2.1
3,904,620	+		BT3079	0.74	-2.1
3,904,621	-		BT3079	0.74	-2.2
3,904,621	-		BT3079	0.74	-2.1
3,904,668	+		BT3079	0.76	+0.3
3,904,733	+		BT3079	0.80	-0.6
3,904,733	+		BT3079	0.80	-1.9
3,904,734	-		BT3079	0.80	-0.5
3,904,834	+		BT3079	0.86	+0.7
3,904,835	-		BT3079	0.86	-0.2
3,904,851	-		BT3079	0.87	-1.9
3,904,860	+		BT3079	0.87	-1.9
3,904,886	+		BT3079	0.89	+0.8
3,904,886	+		BT3079	0.89	-0.8
3,904,886	+		BT3079	0.89	-0.0
3,904,886	+		BT3079	0.89	-1.3
3,904,887	-		BT3079	0.89	-3.2
3,904,921	-				-0.4
3,904,979	+				+1.8
3,904,988	-				-0.6
3,904,988	-				-1.7
3,905,049	+				-2.1
3,905,049	+				-0.6
3,905,082	+				-2.0
3,905,082	+				-2.0
3,905,085	+				+0.5
3,905,088	+				-1.2
3,905,089	-				+0.5
3,905,131	-				-0.7
3,905,142	+				-2.2
3,905,142	+				+0.4
3,905,149	+				+0.0
3,905,151	+				-0.3
3,905,176	+				+0.1
3,905,176	+				-0.3
3,905,185	+				-0.5
3,905,186	-				-1.8
3,905,200	+				+1.3
3,905,208	-				-0.6
3,905,210	+				-0.6
3,905,211	-				-0.3
3,905,211	-				+1.6
3,905,218	+				+0.5
3,905,219	-				+1.1
3,905,248	-				-2.2
3,905,260	-				+0.3
3,905,300	-		BT3080	0.13	+0.6
3,905,300	-		BT3080	0.13	-0.9
3,905,319	+		BT3080	0.15	+0.7
3,905,320	-		BT3080	0.15	-2.7
3,905,418	-		BT3080	0.26	-0.9
3,905,508	+		BT3080	0.35	-1.6
3,905,565	-		BT3080	0.41	-0.5
3,905,584	-		BT3080	0.43	+1.8
3,905,628	+		BT3080	0.48	-1.6
3,905,649	+		BT3080	0.50	-0.8
3,905,689	-		BT3080	0.54	-1.0
3,905,693	+		BT3080	0.55	-0.8
3,905,852	-		BT3080	0.71	-1.4
3,905,891	+		BT3080	0.76	-0.6
3,905,985	+		BT3080	0.85	-0.6
3,906,050	+				-1.3
3,906,050	+				-2.9
3,906,056	-				-1.2
3,906,059	+				-0.5
3,906,060	-				-2.5
3,906,060	-				-0.4
3,906,060	-				-0.1