Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2562

Experiment: BHIS with Ceftazidime 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Ceftazidime 0.5 mg/ml
3,198,124	+		BT2561	0.17	-1.3
3,198,125	-		BT2561	0.17	-0.1
3,198,181	-		BT2561	0.23	-0.5
3,198,204	+		BT2561	0.26	-1.4
3,198,211	-		BT2561	0.26	-1.4
3,198,268	+		BT2561	0.32	-0.5
3,198,268	+		BT2561	0.32	-2.0
3,198,300	+		BT2561	0.36	-0.4
3,198,306	+		BT2561	0.37	+0.0
3,198,334	+		BT2561	0.40	+0.5
3,198,387	-		BT2561	0.45	+2.2
3,198,510	+		BT2561	0.58	-2.7
3,198,562	+		BT2561	0.64	-1.8
3,198,616	+		BT2561	0.70	+0.2
3,198,617	-		BT2561	0.70	-0.8
3,198,622	-		BT2561	0.70	-2.0
3,198,659	+		BT2561	0.74	-1.2
3,198,660	-		BT2561	0.74	-0.7
3,198,665	+		BT2561	0.75	-0.1
3,198,678	-		BT2561	0.76	+0.6
3,198,678	-		BT2561	0.76	-0.3
3,198,695	+		BT2561	0.78	-1.2
3,198,748	+		BT2561	0.84	-0.7
3,198,749	-		BT2561	0.84	-1.2
3,198,833	-				+2.6
3,198,887	+				+0.7
3,198,902	-				+1.1
3,198,922	+				-0.1
3,198,924	+				+1.6
3,198,928	+				-0.4
3,198,956	+				-0.5
3,198,956	+				-0.4
3,198,956	+				+1.2
3,198,956	+				+0.6
3,198,957	-				-1.7
3,198,958	+				-2.4
3,199,018	+				-0.8
3,199,180	+		BT2562	0.41	+0.4
3,199,199	+		BT2562	0.45	-4.2
3,199,205	-		BT2562	0.46	+0.3
3,199,211	+		BT2562	0.48	-2.0
3,199,256	-		BT2562	0.58	-1.0
3,199,256	-		BT2562	0.58	-0.2
3,199,291	+		BT2562	0.67	-0.8
3,199,296	-		BT2562	0.68	+0.2
3,199,338	+		BT2562	0.78	-3.1
3,199,339	-		BT2562	0.78	-3.3
3,199,363	+		BT2562	0.84	-2.2
3,199,364	-		BT2562	0.84	-1.9
3,199,364	-		BT2562	0.84	-0.5
3,199,405	+				-2.4
3,199,426	+				-0.9
3,199,426	+				+0.6
3,199,445	+				-1.1
3,199,446	-				-0.8
3,199,446	-				-2.8
3,199,447	+				-0.8
3,199,448	-				-0.4
3,199,472	+				-0.7
3,199,474	+				-2.2
3,199,474	+				-3.0
3,199,475	-				-0.7
3,199,475	-				-1.4
3,199,476	+				-1.4
3,199,476	+				-0.3
3,199,476	+				-0.5
3,199,477	-				+0.8
3,199,477	-				-0.7
3,199,483	-				-0.3
3,199,575	-				-2.8
3,199,618	+				-0.4
3,199,664	+				+0.9
3,199,692	+				+0.7
3,199,692	+				+0.8
3,199,693	-				+0.5