Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1740

Experiment: BHIS with Ceftazidime 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Ceftazidime 0.5 mg/ml
2,146,181	-		BT1739	0.67	-1.8
2,146,211	+		BT1739	0.68	-2.3
2,146,211	+		BT1739	0.68	-2.8
2,146,226	+		BT1739	0.68	-1.2
2,146,380	+		BT1739	0.74	+0.5
2,146,411	+		BT1739	0.75	+0.5
2,146,500	-		BT1739	0.78	-0.4
2,146,626	+		BT1739	0.83	-1.1
2,146,626	+		BT1739	0.83	-1.8
2,146,626	+		BT1739	0.83	+0.7
2,146,627	-		BT1739	0.83	-0.8
2,146,633	+		BT1739	0.83	-0.9
2,146,735	-		BT1739	0.87	-1.0
2,146,736	+		BT1739	0.87	-1.5
2,146,736	+		BT1739	0.87	+0.5
2,146,744	+		BT1739	0.87	+1.5
2,146,761	-		BT1739	0.88	-1.2
2,146,946	+				-0.6
2,146,947	-				+2.1
2,146,949	+				-2.1
2,146,949	+				-2.4
2,146,974	+				-1.5
2,146,979	-				-1.4
2,147,030	-				+1.3
2,147,067	+				-2.0
2,147,069	+				+0.5
2,147,069	+				-3.5
2,147,121	+				-2.8
2,147,122	-				+1.5
2,147,159	+				-0.0
2,147,182	+				+1.2
2,147,201	+				+1.1
2,147,245	+		BT1740	0.14	+1.5
2,147,246	-		BT1740	0.15	+0.8
2,147,246	-		BT1740	0.15	-0.8
2,147,248	+		BT1740	0.15	-1.1
2,147,250	+		BT1740	0.15	-0.4
2,147,402	-		BT1740	0.47	+2.5
2,147,402	-		BT1740	0.47	-2.5
2,147,421	+		BT1740	0.51	+1.3
2,147,429	-		BT1740	0.52	-0.4
2,147,498	+		BT1740	0.66	+1.5
2,147,543	+		BT1740	0.76	-0.8
2,147,546	-		BT1740	0.76	+0.6
2,147,616	+				+1.8
2,147,752	+		BT1741	0.38	-0.0
2,147,752	+		BT1741	0.38	+2.0
2,147,826	-		BT1741	0.70	-0.4
2,147,846	+		BT1741	0.78	+3.2
2,147,847	-		BT1741	0.79	+1.1
2,147,934	-				-1.3
2,147,948	+				+8.1
2,147,949	-				+4.0
2,147,949	-				+4.5
2,147,959	-				+3.2
2,147,989	-				+8.7
2,148,021	-				+8.1
2,148,021	-				+10.4
2,148,021	-				+5.9
2,148,024	+				+5.1
2,148,024	+				+5.2
2,148,025	-				+7.9
2,148,025	-				+8.0
2,148,025	-				+9.2
2,148,025	-				+8.5
2,148,026	+				+10.6
2,148,027	-				+4.2
2,148,027	-				+4.4
2,148,028	+				+2.5
2,148,029	-				+11.5
2,148,054	+		BT1742	0.11	+8.2
2,148,055	-		BT1742	0.11	+9.0
2,148,113	+		BT1742	0.15	+7.9
2,148,177	-		BT1742	0.20	+9.2
2,148,200	+		BT1742	0.22	+9.2
2,148,201	-		BT1742	0.22	+4.8
2,148,201	-		BT1742	0.22	+3.5
2,148,218	+		BT1742	0.23	+2.3
2,148,223	-		BT1742	0.23	+4.3
2,148,223	-		BT1742	0.23	+9.2
2,148,240	-		BT1742	0.24	+8.4
2,148,248	-		BT1742	0.25	+4.6
2,148,323	+		BT1742	0.30	+3.9
2,148,380	+		BT1742	0.34	+6.7
2,148,380	+		BT1742	0.34	+8.8
2,148,398	+		BT1742	0.35	+4.9
2,148,461	-		BT1742	0.40	+9.5
2,148,481	-		BT1742	0.41	+8.7
2,148,481	-		BT1742	0.41	+8.7
2,148,518	-		BT1742	0.44	+3.2