Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1739

Experiment: BHIS with Ceftazidime 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Ceftazidime 0.5 mg/ml
2,143,420	-		BT1738	0.63	-0.9
2,143,420	-		BT1738	0.63	+0.5
2,143,442	+		BT1738	0.64	+0.1
2,143,453	-		BT1738	0.65	-0.8
2,143,453	-		BT1738	0.65	-2.0
2,143,480	-		BT1738	0.66	-2.4
2,143,698	-		BT1738	0.77	+0.1
2,143,809	+		BT1738	0.83	-0.5
2,143,829	+		BT1738	0.84	-2.4
2,143,871	+		BT1738	0.86	+0.4
2,143,871	+		BT1738	0.86	-0.5
2,143,872	-		BT1738	0.86	-1.5
2,143,872	-		BT1738	0.86	-0.1
2,143,877	+		BT1738	0.87	-1.1
2,143,877	+		BT1738	0.87	-0.6
2,143,878	-		BT1738	0.87	-2.4
2,144,001	-				+0.6
2,144,010	+				+0.5
2,144,082	+				+0.2
2,144,085	+				-1.1
2,144,085	+				+1.1
2,144,086	-				-1.3
2,144,120	-				+0.2
2,144,124	+				-1.3
2,144,125	-				+0.9
2,144,125	-				-0.7
2,144,125	-				-0.1
2,144,125	-				+0.5
2,144,206	-				-1.1
2,144,215	-				+0.5
2,144,331	-				-1.3
2,144,475	+				+0.6
2,144,496	+				-1.3
2,144,511	-				-0.5
2,144,653	-		BT1739	0.12	+0.7
2,144,694	+		BT1739	0.13	-0.7
2,144,694	+		BT1739	0.13	-0.8
2,144,694	+		BT1739	0.13	-1.3
2,144,694	+		BT1739	0.13	-3.0
2,144,695	-		BT1739	0.13	-0.5
2,144,782	-		BT1739	0.16	-0.1
2,144,783	+		BT1739	0.16	-0.1
2,144,843	-		BT1739	0.18	-1.0
2,144,895	-		BT1739	0.20	+1.5
2,144,904	+		BT1739	0.21	+0.2
2,144,931	+		BT1739	0.22	-1.8
2,145,032	+		BT1739	0.25	+0.5
2,145,033	-		BT1739	0.25	-0.1
2,145,033	-		BT1739	0.25	+0.9
2,145,033	-		BT1739	0.25	-1.1
2,145,343	-		BT1739	0.37	+0.9
2,145,442	-		BT1739	0.40	-0.3
2,145,443	+		BT1739	0.40	-1.2
2,145,444	-		BT1739	0.40	-0.5
2,145,448	+		BT1739	0.40	+0.5
2,145,449	-		BT1739	0.40	-0.1
2,145,453	+		BT1739	0.40	+0.5
2,145,460	+		BT1739	0.41	-2.3
2,145,509	+		BT1739	0.42	-2.3
2,145,510	-		BT1739	0.43	-2.8
2,145,593	-		BT1739	0.46	-2.1
2,145,694	+		BT1739	0.49	-1.4
2,145,695	-		BT1739	0.49	-1.7
2,145,695	-		BT1739	0.49	-1.3
2,145,695	-		BT1739	0.49	-1.5
2,145,715	+		BT1739	0.50	+0.3
2,145,807	-		BT1739	0.53	-2.3
2,145,807	-		BT1739	0.53	-1.3
2,145,807	-		BT1739	0.53	-3.0
2,146,031	+		BT1739	0.61	-3.2
2,146,038	-		BT1739	0.62	-0.8
2,146,047	+		BT1739	0.62	-0.6
2,146,181	-		BT1739	0.67	-1.8
2,146,211	+		BT1739	0.68	-2.3
2,146,211	+		BT1739	0.68	-2.8
2,146,226	+		BT1739	0.68	-1.2
2,146,380	+		BT1739	0.74	+0.5
2,146,411	+		BT1739	0.75	+0.5
2,146,500	-		BT1739	0.78	-0.4
2,146,626	+		BT1739	0.83	-1.1
2,146,626	+		BT1739	0.83	-1.8
2,146,626	+		BT1739	0.83	+0.7
2,146,627	-		BT1739	0.83	-0.8
2,146,633	+		BT1739	0.83	-0.9
2,146,735	-		BT1739	0.87	-1.0
2,146,736	+		BT1739	0.87	-1.5
2,146,736	+		BT1739	0.87	+0.5
2,146,744	+		BT1739	0.87	+1.5
2,146,761	-		BT1739	0.88	-1.2
2,146,946	+				-0.6
2,146,947	-				+2.1
2,146,949	+				-2.1
2,146,949	+				-2.4
2,146,974	+				-1.5
2,146,979	-				-1.4
2,147,030	-				+1.3
2,147,067	+				-2.0
2,147,069	+				+0.5
2,147,069	+				-3.5
2,147,121	+				-2.8
2,147,122	-				+1.5
2,147,159	+				-0.0
2,147,182	+				+1.2
2,147,201	+				+1.1
2,147,245	+		BT1740	0.14	+1.5
2,147,246	-		BT1740	0.15	+0.8
2,147,246	-		BT1740	0.15	-0.8
2,147,248	+		BT1740	0.15	-1.1
2,147,250	+		BT1740	0.15	-0.4
2,147,402	-		BT1740	0.47	+2.5
2,147,402	-		BT1740	0.47	-2.5
2,147,421	+		BT1740	0.51	+1.3
2,147,429	-		BT1740	0.52	-0.4
2,147,498	+		BT1740	0.66	+1.5
2,147,543	+		BT1740	0.76	-0.8
2,147,546	-		BT1740	0.76	+0.6
2,147,616	+				+1.8
2,147,752	+		BT1741	0.38	-0.0
2,147,752	+		BT1741	0.38	+2.0
2,147,826	-		BT1741	0.70	-0.4
2,147,846	+		BT1741	0.78	+3.2
2,147,847	-		BT1741	0.79	+1.1
2,147,934	-				-1.3
2,147,948	+				+8.1
2,147,949	-				+4.0
2,147,949	-				+4.5
2,147,959	-				+3.2
2,147,989	-				+8.7
2,148,021	-				+8.1
2,148,021	-				+10.4
2,148,021	-				+5.9
2,148,024	+				+5.1
2,148,024	+				+5.2
2,148,025	-				+7.9
2,148,025	-				+8.0
2,148,025	-				+9.2
2,148,025	-				+8.5
2,148,026	+				+10.6
2,148,027	-				+4.2
2,148,027	-				+4.4
2,148,028	+				+2.5
2,148,029	-				+11.5
2,148,054	+		BT1742	0.11	+8.2
2,148,055	-		BT1742	0.11	+9.0