Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1738

Experiment: BHIS with Ceftazidime 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Ceftazidime 0.5 mg/ml
2,141,242	-		BT1737	0.40	+1.1
2,141,242	-		BT1737	0.40	-2.3
2,141,323	+		BT1737	0.45	-2.1
2,141,323	+		BT1737	0.45	+0.2
2,141,460	+		BT1737	0.54	+2.0
2,141,460	+		BT1737	0.54	+0.3
2,141,461	-		BT1737	0.54	-2.2
2,141,561	-		BT1737	0.61	-1.9
2,141,567	-				+0.5
2,141,589	+		BT1737	0.63	-1.3
2,141,590	-		BT1737	0.63	+0.9
2,141,590	-		BT1737	0.63	+0.4
2,141,630	+		BT1737	0.66	+0.9
2,141,680	+		BT1737	0.69	-0.1
2,141,711	-		BT1737	0.71	-0.1
2,141,711	-		BT1737	0.71	+0.5
2,141,899	+		BT1737	0.83	+1.2
2,142,063	-				-1.1
2,142,120	+				+1.5
2,142,123	+				-1.8
2,142,186	+				-3.0
2,142,202	+				-0.2
2,142,203	-				-1.5
2,142,465	+		BT1738	0.13	-0.7
2,142,486	+		BT1738	0.14	-1.1
2,142,571	-		BT1738	0.19	-1.0
2,142,616	+		BT1738	0.21	+0.5
2,142,641	-		BT1738	0.22	+1.5
2,142,664	-		BT1738	0.23	-2.2
2,142,692	-		BT1738	0.25	+1.5
2,142,693	+		BT1738	0.25	-2.3
2,142,725	+		BT1738	0.27	-0.5
2,142,756	-		BT1738	0.28	-0.5
2,142,849	+		BT1738	0.33	-3.0
2,142,940	-		BT1738	0.38	-0.2
2,142,940	-		BT1738	0.38	-1.5
2,142,942	-		BT1738	0.38	+0.2
2,142,968	-		BT1738	0.39	-0.1
2,143,000	+		BT1738	0.41	+0.9
2,143,003	-		BT1738	0.41	-0.8
2,143,078	+		BT1738	0.45	-0.8
2,143,128	+		BT1738	0.48	+1.5
2,143,262	+		BT1738	0.55	-1.2
2,143,420	-		BT1738	0.63	-0.9
2,143,420	-		BT1738	0.63	+0.5
2,143,442	+		BT1738	0.64	+0.1
2,143,453	-		BT1738	0.65	-0.8
2,143,453	-		BT1738	0.65	-2.0
2,143,480	-		BT1738	0.66	-2.4
2,143,698	-		BT1738	0.77	+0.1
2,143,809	+		BT1738	0.83	-0.5
2,143,829	+		BT1738	0.84	-2.4
2,143,871	+		BT1738	0.86	+0.4
2,143,871	+		BT1738	0.86	-0.5
2,143,872	-		BT1738	0.86	-1.5
2,143,872	-		BT1738	0.86	-0.1
2,143,877	+		BT1738	0.87	-1.1
2,143,877	+		BT1738	0.87	-0.6
2,143,878	-		BT1738	0.87	-2.4
2,144,001	-				+0.6
2,144,010	+				+0.5
2,144,082	+				+0.2
2,144,085	+				-1.1
2,144,085	+				+1.1
2,144,086	-				-1.3
2,144,120	-				+0.2
2,144,124	+				-1.3
2,144,125	-				+0.9
2,144,125	-				-0.7
2,144,125	-				-0.1
2,144,125	-				+0.5
2,144,206	-				-1.1
2,144,215	-				+0.5
2,144,331	-				-1.3
2,144,475	+				+0.6
2,144,496	+				-1.3
2,144,511	-				-0.5
2,144,653	-		BT1739	0.12	+0.7
2,144,694	+		BT1739	0.13	-0.7
2,144,694	+		BT1739	0.13	-0.8
2,144,694	+		BT1739	0.13	-1.3
2,144,694	+		BT1739	0.13	-3.0
2,144,695	-		BT1739	0.13	-0.5
2,144,782	-		BT1739	0.16	-0.1
2,144,783	+		BT1739	0.16	-0.1
2,144,843	-		BT1739	0.18	-1.0
2,144,895	-		BT1739	0.20	+1.5
2,144,904	+		BT1739	0.21	+0.2
2,144,931	+		BT1739	0.22	-1.8
2,145,032	+		BT1739	0.25	+0.5
2,145,033	-		BT1739	0.25	-0.1
2,145,033	-		BT1739	0.25	+0.9
2,145,033	-		BT1739	0.25	-1.1