Experiment: BHIS with Ceftazidime 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0061 and BT0062 overlap by 4 nucleotides BT0062 and BT0063 are separated by 52 nucleotides BT0063 and BT0064 are separated by 20 nucleotides
BT0061: BT0061 - putative tyrosine-protein kinase ptk (NCBI ptt file), at 56,555 to 58,894
BT0061
BT0062: BT0062 - hypothetical protein (NCBI ptt file), at 58,891 to 59,103
BT0062
BT0063: BT0063 - hypothetical protein (NCBI ptt file), at 59,156 to 59,356
BT0063
BT0064: BT0064 - hypothetical protein (NCBI ptt file), at 59,377 to 61,551
BT0064
Position (kb) 59
60 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 58.625 kb on + strand, within BT0061 at 59.155 kb on + strand at 59.285 kb on - strand, within BT0063 at 59.330 kb on - strand, within BT0063 at 59.351 kb on - strand at 59.361 kb on + strand at 59.362 kb on - strand at 59.362 kb on - strand at 59.460 kb on + strand at 59.461 kb on - strand at 59.490 kb on + strand at 59.599 kb on + strand, within BT0064 at 59.624 kb on - strand, within BT0064 at 59.624 kb on - strand, within BT0064 at 59.624 kb on - strand, within BT0064 at 59.624 kb on - strand, within BT0064 at 59.624 kb on - strand, within BT0064 at 59.624 kb on - strand, within BT0064 at 59.629 kb on + strand, within BT0064 at 59.668 kb on + strand, within BT0064 at 59.669 kb on - strand, within BT0064 at 59.767 kb on + strand, within BT0064 at 60.175 kb on - strand, within BT0064
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS with Ceftazidime 0.5 mg/ml remove 58,625 + BT0061 0.88 -0.4 59,155 + -0.6 59,285 - BT0063 0.64 -3.9 59,330 - BT0063 0.87 -1.5 59,351 - -0.2 59,361 + -2.0 59,362 - +0.9 59,362 - -2.0 59,460 + -2.3 59,461 - +1.7 59,490 + -0.2 59,599 + BT0064 0.10 -1.4 59,624 - BT0064 0.11 +1.8 59,624 - BT0064 0.11 -0.7 59,624 - BT0064 0.11 -1.7 59,624 - BT0064 0.11 -0.7 59,624 - BT0064 0.11 -0.9 59,624 - BT0064 0.11 -1.6 59,629 + BT0064 0.12 +0.0 59,668 + BT0064 0.13 -1.9 59,669 - BT0064 0.13 +3.0 59,767 + BT0064 0.18 +0.4 60,175 - BT0064 0.37 -0.5
Or see this region's nucleotide sequence