Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0011

Experiment: BHIS with Ceftazidime 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Ceftazidime 0.5 mg/ml
7,277	+		BT0010	0.45	-1.4
7,277	+		BT0010	0.45	-0.6
7,348	-		BT0010	0.51	-1.9
7,348	-		BT0010	0.51	+1.4
7,353	-		BT0010	0.52	-0.9
7,614	-		BT0010	0.76	-1.4
7,627	-		BT0010	0.77	+1.4
7,756	+		BT0010	0.89	-1.0
7,908	+				+1.1
7,909	-				+0.4
7,937	-				+1.6
7,967	-				-3.4
7,996	+				+0.9
7,997	-				+1.0
8,059	-				+1.6
8,097	-				-0.2
8,138	-				+0.4
8,138	-				+0.9
8,154	-				+1.4
8,393	+		BT0011	0.37	-2.2
8,393	+		BT0011	0.37	-2.7
8,394	-		BT0011	0.38	+2.0
8,448	-		BT0011	0.44	-0.0
8,448	-		BT0011	0.44	-2.3
8,472	-		BT0011	0.47	-1.2
8,497	-		BT0011	0.50	-2.9
8,505	-		BT0011	0.51	-1.8
8,505	-		BT0011	0.51	-0.2
8,550	-		BT0011	0.56	+1.1
8,550	-		BT0011	0.56	-2.0
8,550	-		BT0011	0.56	+0.8
8,551	+		BT0011	0.56	+0.2
8,681	+		BT0011	0.71	-0.9
8,688	-		BT0011	0.72	-0.2
8,711	-		BT0011	0.75	-0.5
8,767	+		BT0011	0.82	-1.5
9,067	-				+1.4
9,116	+		BT0012	0.11	-1.8
9,116	+		BT0012	0.11	-0.7
9,216	-		BT0012	0.20	+0.5
9,292	-		BT0012	0.26	-0.3
9,416	+		BT0012	0.37	+0.4
9,417	-		BT0012	0.37	+0.9
9,559	-		BT0012	0.49	+0.7
9,580	+		BT0012	0.51	-0.2
9,586	-		BT0012	0.52	+3.1
9,645	+		BT0012	0.57	+0.8
9,645	+		BT0012	0.57	+1.0
9,646	-		BT0012	0.57	+0.8
9,686	-		BT0012	0.60	-0.1
9,704	-		BT0012	0.62	+0.6
9,714	+		BT0012	0.63	+0.4
9,714	+		BT0012	0.63	+0.4
9,793	-		BT0012	0.69	-0.1
9,834	+		BT0012	0.73	-0.4
9,877	-		BT0012	0.77	-0.9
9,877	-		BT0012	0.77	-2.7