Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08035

Experiment: R2A with Strontium chloride 3.90625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Strontium chloride 3.90625 mM
1,758,608	+		LRK54_RS08025	0.58	+1.1
1,758,608	+		LRK54_RS08025	0.58	+1.4
1,758,608	+		LRK54_RS08025	0.58	-0.4
1,758,609	-		LRK54_RS08025	0.58	+0.5
1,758,609	-		LRK54_RS08025	0.58	-0.4
1,758,861	-				-0.0
1,759,063	+		LRK54_RS08030	0.26	+0.2
1,759,063	+		LRK54_RS08030	0.26	-2.0
1,759,063	+		LRK54_RS08030	0.26	-1.5
1,759,063	+		LRK54_RS08030	0.26	+1.3
1,759,063	+		LRK54_RS08030	0.26	-0.2
1,759,063	+		LRK54_RS08030	0.26	-0.8
1,759,063	+		LRK54_RS08030	0.26	-0.1
1,759,064	-		LRK54_RS08030	0.26	-1.5
1,759,064	-		LRK54_RS08030	0.26	+0.5
1,759,064	-		LRK54_RS08030	0.26	-0.9
1,759,064	-		LRK54_RS08030	0.26	+0.4
1,759,064	-		LRK54_RS08030	0.26	+0.2
1,759,117	+		LRK54_RS08030	0.36	+1.0
1,759,117	+		LRK54_RS08030	0.36	-0.4
1,759,117	+		LRK54_RS08030	0.36	+0.5
1,759,118	-		LRK54_RS08030	0.36	+0.7
1,759,118	-		LRK54_RS08030	0.36	-2.2
1,759,118	-		LRK54_RS08030	0.36	+0.5
1,759,118	-		LRK54_RS08030	0.36	+0.3
1,759,118	-		LRK54_RS08030	0.36	-0.1
1,759,118	-		LRK54_RS08030	0.36	+0.2
1,759,118	-		LRK54_RS08030	0.36	-0.3
1,759,264	+		LRK54_RS08030	0.63	+0.2
1,759,264	+		LRK54_RS08030	0.63	-1.1
1,759,265	-		LRK54_RS08030	0.63	-0.2
1,759,265	-		LRK54_RS08030	0.63	-1.0
1,759,265	-		LRK54_RS08030	0.63	-0.3
1,759,265	-		LRK54_RS08030	0.63	+1.2
1,759,265	-		LRK54_RS08030	0.63	+0.7
1,759,528	+				-0.6
1,759,528	+				+0.2
1,759,528	+				-0.2
1,759,528	+				-2.8
1,759,528	+				-0.1
1,759,528	+				-0.3
1,759,528	+				-1.1
1,759,528	+				-0.9
1,759,528	+				-1.1
1,759,528	+				-0.5
1,759,528	+				-0.4
1,759,528	+				+0.1
1,759,528	+				-0.4
1,759,528	+				-0.3
1,759,528	+				+0.5
1,759,528	+				-0.6
1,759,528	+				+2.7
1,759,529	-				+1.7
1,759,529	-				-0.4
1,759,529	-				+0.8
1,759,529	-				+2.4
1,759,529	-				-0.3
1,759,529	-				-0.0
1,759,529	-				-0.9
1,759,529	-				-0.9
1,759,529	-				+2.0
1,759,529	-				-0.1
1,759,540	+				-0.8
1,759,541	-				-0.7
1,759,541	-				-0.3
1,759,657	+		LRK54_RS08035	0.24	-0.1
1,759,657	+		LRK54_RS08035	0.24	+0.6
1,759,657	+		LRK54_RS08035	0.24	+0.0
1,759,657	+		LRK54_RS08035	0.24	+0.3
1,759,657	+		LRK54_RS08035	0.24	-0.2
1,759,657	+		LRK54_RS08035	0.24	+0.5
1,759,657	+		LRK54_RS08035	0.24	-0.1
1,759,658	-		LRK54_RS08035	0.24	-0.8
1,759,658	-		LRK54_RS08035	0.24	+0.1
1,759,658	-		LRK54_RS08035	0.24	-1.7
1,759,658	-		LRK54_RS08035	0.24	+0.4
1,759,658	-		LRK54_RS08035	0.24	+0.0
1,759,658	-		LRK54_RS08035	0.24	+1.6
1,759,658	-		LRK54_RS08035	0.24	-0.2
1,759,658	-		LRK54_RS08035	0.24	+0.5
1,759,663	+		LRK54_RS08035	0.25	-0.9
1,759,663	+		LRK54_RS08035	0.25	+1.4
1,759,663	+		LRK54_RS08035	0.25	+0.4
1,759,663	+		LRK54_RS08035	0.25	+0.2
1,759,663	+		LRK54_RS08035	0.25	+0.4
1,759,664	-		LRK54_RS08035	0.25	-0.0
1,759,664	-		LRK54_RS08035	0.25	+0.5
1,759,664	-		LRK54_RS08035	0.25	-0.8
1,759,664	-		LRK54_RS08035	0.25	-0.9
1,759,664	-		LRK54_RS08035	0.25	+0.2
1,759,664	-		LRK54_RS08035	0.25	+0.7
1,759,664	-		LRK54_RS08035	0.25	+1.4
1,759,669	+		LRK54_RS08035	0.26	-0.3
1,759,669	+		LRK54_RS08035	0.26	+0.5
1,759,669	+		LRK54_RS08035	0.26	+0.8
1,759,670	-		LRK54_RS08035	0.26	+0.1
1,759,670	-		LRK54_RS08035	0.26	-0.0
1,759,670	-		LRK54_RS08035	0.26	-0.3
1,759,670	-		LRK54_RS08035	0.26	+0.1
1,759,682	-		LRK54_RS08035	0.28	-1.0
1,759,753	+		LRK54_RS08035	0.41	+0.8
1,759,753	+		LRK54_RS08035	0.41	+0.8
1,759,753	+		LRK54_RS08035	0.41	+0.7
1,759,754	-		LRK54_RS08035	0.41	+0.1
1,759,754	-		LRK54_RS08035	0.41	+0.9
1,759,754	-		LRK54_RS08035	0.41	-0.3
1,759,754	-		LRK54_RS08035	0.41	+1.0
1,759,754	-		LRK54_RS08035	0.41	-1.5
1,759,951	+		LRK54_RS08035	0.75	-0.9
1,759,951	+		LRK54_RS08035	0.75	-0.3
1,759,951	+		LRK54_RS08035	0.75	-1.7
1,759,951	+		LRK54_RS08035	0.75	+0.5
1,759,951	+		LRK54_RS08035	0.75	-0.8
1,759,951	+		LRK54_RS08035	0.75	-0.6
1,759,951	+		LRK54_RS08035	0.75	-0.0
1,759,951	+		LRK54_RS08035	0.75	-0.9
1,759,951	+		LRK54_RS08035	0.75	+0.6
1,759,951	+		LRK54_RS08035	0.75	+0.4
1,759,951	+		LRK54_RS08035	0.75	-2.6
1,759,951	+		LRK54_RS08035	0.75	+0.3
1,759,951	+		LRK54_RS08035	0.75	-0.4
1,759,951	+		LRK54_RS08035	0.75	+2.7
1,759,951	+		LRK54_RS08035	0.75	-1.5
1,759,951	+		LRK54_RS08035	0.75	-1.8
1,759,951	+		LRK54_RS08035	0.75	-0.6
1,759,951	+		LRK54_RS08035	0.75	-1.0
1,759,951	+		LRK54_RS08035	0.75	+0.3
1,759,951	+		LRK54_RS08035	0.75	+0.2
1,759,951	+		LRK54_RS08035	0.75	+1.3
1,759,951	+		LRK54_RS08035	0.75	-0.4
1,759,951	+		LRK54_RS08035	0.75	-1.3
1,759,951	+		LRK54_RS08035	0.75	+0.1
1,759,951	+		LRK54_RS08035	0.75	+0.7
1,759,951	+		LRK54_RS08035	0.75	+1.1
1,759,951	+		LRK54_RS08035	0.75	-0.0
1,759,951	+		LRK54_RS08035	0.75	-0.3
1,759,951	+		LRK54_RS08035	0.75	-0.8
1,759,951	+		LRK54_RS08035	0.75	-0.1
1,759,951	+		LRK54_RS08035	0.75	+2.4
1,759,951	+		LRK54_RS08035	0.75	+0.0
1,759,951	+		LRK54_RS08035	0.75	-0.8
1,759,952	-		LRK54_RS08035	0.76	-1.0
1,759,952	-		LRK54_RS08035	0.76	-0.4
1,759,952	-		LRK54_RS08035	0.76	+0.7
1,759,952	-		LRK54_RS08035	0.76	-0.6
1,759,952	-		LRK54_RS08035	0.76	-0.5
1,759,952	-		LRK54_RS08035	0.76	-0.2
1,759,952	-		LRK54_RS08035	0.76	+0.8
1,759,952	-		LRK54_RS08035	0.76	-0.3
1,759,952	-		LRK54_RS08035	0.76	+0.1
1,759,952	-		LRK54_RS08035	0.76	+0.2
1,759,952	-		LRK54_RS08035	0.76	+0.7
1,759,952	-		LRK54_RS08035	0.76	+1.3
1,759,952	-		LRK54_RS08035	0.76	+0.5
1,759,952	-		LRK54_RS08035	0.76	+0.5
1,759,952	-		LRK54_RS08035	0.76	-1.1
1,759,952	-		LRK54_RS08035	0.76	-0.2
1,759,952	-		LRK54_RS08035	0.76	-1.4
1,759,952	-		LRK54_RS08035	0.76	-0.9
1,759,952	-		LRK54_RS08035	0.76	-0.7
1,759,952	-		LRK54_RS08035	0.76	+0.3
1,759,952	-		LRK54_RS08035	0.76	+0.7
1,759,952	-		LRK54_RS08035	0.76	+0.7
1,759,952	-		LRK54_RS08035	0.76	+0.7
1,759,952	-		LRK54_RS08035	0.76	-0.7
1,759,952	-		LRK54_RS08035	0.76	+1.1
1,759,952	-		LRK54_RS08035	0.76	+0.4
1,759,952	-		LRK54_RS08035	0.76	+0.2
1,760,029	+		LRK54_RS08035	0.89	+1.3
1,760,029	+		LRK54_RS08035	0.89	+0.1
1,760,029	+		LRK54_RS08035	0.89	-0.6
1,760,029	+		LRK54_RS08035	0.89	+0.0
1,760,029	+		LRK54_RS08035	0.89	-0.2
1,760,029	+		LRK54_RS08035	0.89	-0.2
1,760,029	+		LRK54_RS08035	0.89	+0.4
1,760,029	+		LRK54_RS08035	0.89	-1.9
1,760,029	+		LRK54_RS08035	0.89	+0.1
1,760,029	+		LRK54_RS08035	0.89	+0.9
1,760,029	+		LRK54_RS08035	0.89	+0.3
1,760,029	+		LRK54_RS08035	0.89	+0.4
1,760,029	+		LRK54_RS08035	0.89	+1.3
1,760,029	+		LRK54_RS08035	0.89	-1.9
1,760,029	+		LRK54_RS08035	0.89	-0.1
1,760,029	+		LRK54_RS08035	0.89	+1.0
1,760,029	+		LRK54_RS08035	0.89	-0.1
1,760,029	+		LRK54_RS08035	0.89	-0.8
1,760,029	+		LRK54_RS08035	0.89	+0.9
1,760,030	-		LRK54_RS08035	0.89	-0.2
1,760,030	-		LRK54_RS08035	0.89	+0.2
1,760,030	-		LRK54_RS08035	0.89	+0.4
1,760,030	-		LRK54_RS08035	0.89	-0.9
1,760,030	-		LRK54_RS08035	0.89	+2.1
1,760,030	-		LRK54_RS08035	0.89	-0.4
1,760,030	-		LRK54_RS08035	0.89	-0.5
1,760,030	-		LRK54_RS08035	0.89	+0.1
1,760,030	-		LRK54_RS08035	0.89	+2.1
1,760,030	-		LRK54_RS08035	0.89	-0.7
1,760,030	-		LRK54_RS08035	0.89	+0.1
1,760,030	-		LRK54_RS08035	0.89	-0.4
1,760,291	+		LRK54_RS08040	0.52	+0.2
1,760,291	+		LRK54_RS08040	0.52	-0.8
1,760,291	+		LRK54_RS08040	0.52	-0.2
1,760,291	+		LRK54_RS08040	0.52	-0.6
1,760,292	-		LRK54_RS08040	0.53	+0.3
1,760,292	-		LRK54_RS08040	0.53	-0.9
1,760,292	-		LRK54_RS08040	0.53	-1.9
1,760,292	-		LRK54_RS08040	0.53	-0.3
1,760,292	-		LRK54_RS08040	0.53	+0.2
1,760,344	+		LRK54_RS08040	0.68	-1.0
1,760,345	-		LRK54_RS08040	0.68	+1.1
1,760,359	+		LRK54_RS08040	0.72	-0.4
1,760,359	+		LRK54_RS08040	0.72	-0.6
1,760,359	+		LRK54_RS08040	0.72	-0.7
1,760,360	-		LRK54_RS08040	0.72	+0.1
1,760,360	-		LRK54_RS08040	0.72	+0.2
1,760,360	-		LRK54_RS08040	0.72	-1.3
1,760,360	-		LRK54_RS08040	0.72	+0.5
1,760,360	-		LRK54_RS08040	0.72	+0.7
1,760,360	-		LRK54_RS08040	0.72	+0.4
1,760,360	-		LRK54_RS08040	0.72	-0.6
1,760,360	-		LRK54_RS08040	0.72	+1.3
1,760,632	+				-0.3
1,760,632	+				-0.6
1,760,632	+				-0.3
1,760,633	-				-0.5
1,760,633	-				+2.7
1,760,633	-				-1.0
1,760,633	-				+0.4
1,760,633	-				-0.4
1,760,666	+		LRK54_RS08045	0.10	+1.1
1,760,917	+		LRK54_RS08045	0.81	-0.3
1,760,917	+		LRK54_RS08045	0.81	-0.5
1,760,917	+		LRK54_RS08045	0.81	+1.0
1,760,917	+		LRK54_RS08045	0.81	-0.2
1,760,917	+		LRK54_RS08045	0.81	+0.3
1,760,918	-		LRK54_RS08045	0.82	-0.1
1,760,918	-		LRK54_RS08045	0.82	+0.6
1,760,918	-		LRK54_RS08045	0.82	-0.4
1,760,918	-		LRK54_RS08045	0.82	-0.7
1,760,918	-		LRK54_RS08045	0.82	+0.1
1,760,918	-		LRK54_RS08045	0.82	+0.1
1,760,918	-		LRK54_RS08045	0.82	-0.2
1,760,998	+				+0.1
1,760,999	-				+0.5
1,761,049	+				+0.8
1,761,049	+				-0.5
1,761,049	+				-0.5
1,761,049	+				-1.1
1,761,049	+				+3.7
1,761,049	+				+0.8
1,761,049	+				-1.6
1,761,050	-				+1.7
1,761,050	-				+2.3
1,761,050	-				-1.6
1,761,050	-				-1.3
1,761,050	-				-0.6