Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03140

Experiment: PYE with nitrate 100 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrate 100 mM
3,289,439	-		CCNA_03139	0.52	+0.9
3,289,471	+		CCNA_03139	0.54	-2.4
3,289,476	+		CCNA_03139	0.54	+2.2
3,289,481	+		CCNA_03139	0.55	+2.9
3,289,484	-		CCNA_03139	0.55	+1.3
3,289,484	-		CCNA_03139	0.55	+1.9
3,289,489	-		CCNA_03139	0.55	+1.0
3,289,563	-		CCNA_03139	0.59	+1.5
3,289,583	+		CCNA_03139	0.60	+1.2
3,289,591	-		CCNA_03139	0.61	+0.5
3,289,591	-		CCNA_03139	0.61	+0.3
3,289,591	-		CCNA_03139	0.61	+0.6
3,289,622	+		CCNA_03139	0.62	-1.1
3,289,630	-		CCNA_03139	0.63	+1.7
3,289,630	-		CCNA_03139	0.63	+1.7
3,289,630	-		CCNA_03139	0.63	+0.9
3,289,630	-		CCNA_03139	0.63	+0.8
3,289,654	+		CCNA_03139	0.64	+0.2
3,289,662	-		CCNA_03139	0.64	+0.5
3,289,662	-		CCNA_03139	0.64	-0.0
3,289,686	+		CCNA_03139	0.66	+1.4
3,289,686	+		CCNA_03139	0.66	-0.4
3,289,686	+		CCNA_03139	0.66	-1.1
3,289,686	+		CCNA_03139	0.66	-0.6
3,289,686	+		CCNA_03139	0.66	+0.6
3,289,694	-		CCNA_03139	0.66	+1.2
3,289,694	-		CCNA_03139	0.66	+0.5
3,289,695	-		CCNA_03139	0.66	+0.3
3,289,717	-		CCNA_03139	0.67	+0.7
3,289,750	+		CCNA_03139	0.69	+1.9
3,289,773	-		CCNA_03139	0.70	+1.6
3,289,775	+		CCNA_03139	0.70	-1.8
3,289,775	+		CCNA_03139	0.70	-0.4
3,289,775	+		CCNA_03139	0.70	+0.9
3,289,796	-		CCNA_03139	0.72	-0.4
3,289,886	-		CCNA_03139	0.76	-0.3
3,289,920	-		CCNA_03139	0.78	+0.8
3,289,920	-		CCNA_03139	0.78	+0.4
3,289,968	-		CCNA_03139	0.81	+0.7
3,290,005	+		CCNA_03139	0.83	-1.3
3,290,013	-		CCNA_03139	0.83	+1.4
3,290,028	+		CCNA_03139	0.84	-0.3
3,290,036	-		CCNA_03139	0.85	+0.1
3,290,036	-		CCNA_03139	0.85	-1.4
3,290,036	-		CCNA_03139	0.85	+0.1
3,290,036	-		CCNA_03139	0.85	+0.6
3,290,036	-		CCNA_03139	0.85	-1.5
3,290,055	-		CCNA_03139	0.86	+0.8
3,290,072	-		CCNA_03139	0.86	+1.8
3,290,094	-		CCNA_03139	0.88	-0.6
3,290,096	+		CCNA_03139	0.88	-1.0
3,290,104	-		CCNA_03139	0.88	+0.5
3,290,104	-		CCNA_03139	0.88	+1.6
3,290,104	-		CCNA_03139	0.88	+0.1
3,290,104	-		CCNA_03139	0.88	-2.8
3,290,104	-		CCNA_03139	0.88	+0.5
3,290,117	+		CCNA_03139	0.89	-1.6
3,290,125	-		CCNA_03139	0.89	+3.2
3,290,127	+		CCNA_03139	0.89	+1.2
3,290,160	-				-0.8
3,290,188	-				+0.2
3,290,232	-				-0.7
3,290,287	+				+0.9
3,290,292	+				-0.2
3,290,300	-				-0.4
3,290,348	+				-1.1
3,290,462	+				+0.7
3,290,471	-				-0.6
3,290,500	+				+1.1
3,290,559	-		CCNA_03140	0.15	-2.2
3,290,581	+		CCNA_03140	0.18	+0.3
3,290,662	+		CCNA_03140	0.27	+0.8
3,290,662	+		CCNA_03140	0.27	+0.8
3,290,711	+		CCNA_03140	0.33	-0.5
3,290,721	+		CCNA_03140	0.34	+1.5
3,290,727	-		CCNA_03140	0.34	-0.1
3,290,729	-		CCNA_03140	0.35	-0.1
3,290,758	+		CCNA_03140	0.38	+1.5
3,290,816	+		CCNA_03140	0.44	+0.6
3,290,889	+		CCNA_03140	0.53	-0.2
3,290,889	+		CCNA_03140	0.53	+0.7
3,290,897	-		CCNA_03140	0.53	-1.9
3,290,897	-		CCNA_03140	0.53	+0.1
3,291,047	-		CCNA_03140	0.70	-0.6
3,291,071	+		CCNA_03140	0.73	+1.6
3,291,072	+		CCNA_03140	0.73	+1.7
3,291,129	+		CCNA_03140	0.79	+0.2
3,291,139	-		CCNA_03140	0.81	-0.1
3,291,175	+		CCNA_03140	0.85	-0.4
3,291,175	+		CCNA_03140	0.85	+1.2
3,291,183	-		CCNA_03140	0.86	+0.5
3,291,221	-		CCNA_03140	0.90	-0.1
3,291,225	+				-2.0
3,291,260	+				+1.1
3,291,293	-				+1.2
3,291,300	+				+0.7
3,291,300	+				+0.3
3,291,354	-				+1.2
3,291,369	+				+2.1
3,291,369	+				+0.5
3,291,377	-				-1.1
3,291,384	-				-0.5
3,291,405	+				+0.7
3,291,407	-				+1.3
3,291,415	+		CCNA_03141	0.10	+1.7
3,291,417	-		CCNA_03141	0.11	-0.6
3,291,421	+		CCNA_03141	0.11	-0.5
3,291,421	+		CCNA_03141	0.11	+1.2
3,291,423	-		CCNA_03141	0.12	+1.3
3,291,424	-		CCNA_03141	0.12	-1.1
3,291,461	-		CCNA_03141	0.19	+1.2
3,291,495	+		CCNA_03141	0.26	+1.2
3,291,500	+		CCNA_03141	0.27	+3.2
3,291,503	-		CCNA_03141	0.27	-0.2
3,291,508	-		CCNA_03141	0.28	+0.6
3,291,569	+		CCNA_03141	0.40	+2.0
3,291,570	+		CCNA_03141	0.40	+3.2
3,291,578	-		CCNA_03141	0.42	+1.2
3,291,578	-		CCNA_03141	0.42	-0.5
3,291,578	-		CCNA_03141	0.42	+1.5
3,291,601	-		CCNA_03141	0.46	-1.5
3,291,606	+		CCNA_03141	0.47	-1.7
3,291,606	+		CCNA_03141	0.47	+1.6
3,291,606	+		CCNA_03141	0.47	+1.9
3,291,606	+		CCNA_03141	0.47	+0.7
3,291,630	+		CCNA_03141	0.52	+2.2
3,291,630	+		CCNA_03141	0.52	-1.6
3,291,630	+		CCNA_03141	0.52	+0.1
3,291,630	+		CCNA_03141	0.52	-1.1
3,291,630	+		CCNA_03141	0.52	+1.2
3,291,630	+		CCNA_03141	0.52	+0.2
3,291,630	+		CCNA_03141	0.52	-0.9
3,291,630	+		CCNA_03141	0.52	+0.2
3,291,630	+		CCNA_03141	0.52	-0.1
3,291,630	+		CCNA_03141	0.52	-1.5
3,291,630	+		CCNA_03141	0.52	+0.1
3,291,630	+		CCNA_03141	0.52	+1.7
3,291,630	+		CCNA_03141	0.52	+0.6
3,291,630	+		CCNA_03141	0.52	+0.7
3,291,630	+		CCNA_03141	0.52	-1.9
3,291,630	+		CCNA_03141	0.52	-1.4
3,291,630	+		CCNA_03141	0.52	-2.0
3,291,630	+		CCNA_03141	0.52	-2.0
3,291,630	+		CCNA_03141	0.52	+1.1
3,291,638	-		CCNA_03141	0.53	+0.6
3,291,638	-		CCNA_03141	0.53	-0.8
3,291,638	-		CCNA_03141	0.53	-0.7
3,291,638	-		CCNA_03141	0.53	+1.2
3,291,638	-		CCNA_03141	0.53	-1.7
3,291,638	-		CCNA_03141	0.53	-2.2
3,291,638	-				+2.2
3,291,638	-		CCNA_03141	0.53	-1.0
3,291,638	-		CCNA_03141	0.53	-0.6
3,291,638	-		CCNA_03141	0.53	+0.5
3,291,638	-		CCNA_03141	0.53	+1.3
3,291,638	-		CCNA_03141	0.53	-0.6
3,291,652	-		CCNA_03141	0.56	-2.1
3,291,673	+		CCNA_03141	0.60	-0.1
3,291,673	+		CCNA_03141	0.60	+1.0
3,291,673	+		CCNA_03141	0.60	+0.3
3,291,681	-		CCNA_03141	0.62	-1.5
3,291,683	+		CCNA_03141	0.62	+0.8
3,291,691	-		CCNA_03141	0.64	-1.7
3,291,707	+		CCNA_03141	0.67	+0.6
3,291,725	+		CCNA_03141	0.70	+1.2
3,291,727	+		CCNA_03141	0.71	+0.2
3,291,763	-		CCNA_03141	0.78	+1.2
3,291,763	-		CCNA_03141	0.78	-2.2
3,291,777	+		CCNA_03141	0.80	+1.2
3,291,809	+		CCNA_03141	0.87	+1.0
3,291,839	+				-0.3
3,291,882	+				+0.8
3,291,917	+				+1.3
3,291,990	+				+0.7
3,292,001	+				+2.0
3,292,044	+				+1.4
3,292,044	+				-0.3
3,292,052	-				+0.7
3,292,052	-				-0.6
3,292,052	-				+0.4
3,292,121	+				+1.2
3,292,134	-				+1.6
3,292,134	-				+1.9
3,292,134	-				+1.1
3,292,137	+				+0.5
3,292,137	+				+1.7
3,292,163	+				+0.1
3,292,180	-				+2.1
3,292,180	-				+2.6
3,292,226	+				-0.8
3,292,226	+				+1.2
3,292,234	-				+2.3
3,292,240	+				-1.1
3,292,248	-				+2.1
3,292,248	-				+3.1
3,292,266	-				+1.0